Repositories list

• ninjaGUI

  Public
  fNIRS data acquisition GUI

  MATLAB

  •7•14•1•0•Updated Nov 4, 2025Nov 4, 2025

• ninjaWeb

  Public
  Python

  •1•1•0•0•Updated Oct 24, 2025Oct 24, 2025

• NN24_25-Hardware-Firmware

  Public
  VHDL

  •0•1•0•0•Updated Oct 18, 2025Oct 18, 2025

• snirf2bids

  Public
  Python package for generating BIDS-fNIRS files from SNIRF files

  bidsfnirssnirf

  Python

  •

  MIT License

  •8•4•0•1•Updated Sep 17, 2025Sep 17, 2025

• ninjaCap2

  Public
  MATLAB

  •0•3•0•0•Updated Sep 17, 2025Sep 17, 2025

• pysnirf2

  Public
  Python package for reading, writing and validating Shared Near Infrared Spectroscopy Format (SNIRF) files

  fnirsbrain-imagingnirs+ 3openfnirsnear-infrared-spectroscopysnirf

  Python

  •

  GNU General Public License v3.0

  •16•23•5•1•Updated Aug 7, 2025Aug 7, 2025

• OCTBesselStalls

  Public
  0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

• Multicamera-Imaging-Software

  Public
  For multi-channel SCOS

  Python

  •0•1•0•0•Updated Jul 15, 2025Jul 15, 2025

• 2025-SCOS

  Public
  Communications Biology 2025 - Mapping human cerebral blood flow with high-density, multi-channel speckle contrast optical spectroscopy

  MATLAB

  •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

• cedalion_scos-2025

  Public
  fNIRS analysis toolbox

  Python

  •

  MIT License

  •24•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• fbLSC-library

  Public
  MATLAB

  •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• AtlasViewer

  Public
  MATLAB application for imaging and reconstruction of fNIRS data on atlas anatomy

  MATLAB

  •

  Other

  •18•42•6•2•Updated Feb 21, 2025Feb 21, 2025

• NN22-Technical-Documents

  Public
  Repository for the storage and dissemination of NN22 technical documents

  C

  •2•10•2•0•Updated Feb 18, 2025Feb 18, 2025

• psoct_vessel_graphing

  Public
  Suite of tools for segmenting vessels from PS-OCT images and then converting the segments to a graph.

  MATLAB

  •6•1•7•0•Updated Sep 12, 2024Sep 12, 2024

• fNIRS_tools

  Public
  Python

  •0•0•0•0•Updated Aug 14, 2024Aug 14, 2024

• Homer3

  Public
  MATLAB application for fNIRS data processing and visualization

  neuroscienceneuroimagingfnirs

  MATLAB

  •57•114•20•7•Updated Aug 13, 2024Aug 13, 2024

• DataTree

  Public
  MATLAB

  •4•2•1•0•Updated Jun 20, 2024Jun 20, 2024

• Utils

  Public
  MATLAB

  •2•0•0•0•Updated May 28, 2024May 28, 2024

• FuncRegistry

  Public
  MATLAB

  •1•0•0•0•Updated May 28, 2024May 28, 2024

• SCOT_Rytov

  Public
  MATLAB

  •0•0•0•0•Updated Apr 2, 2024Apr 2, 2024

• snirf_quality_report

  Public
  Python

  •0•4•0•0•Updated Oct 25, 2023Oct 25, 2023

• SpeckleDynamicsModelFitting

  Public
  MATLAB

  •1•1•0•0•Updated Oct 12, 2023Oct 12, 2023

• SerialSectOCT

  Public
  C

  •1•2•0•0•Updated Aug 5, 2023Aug 5, 2023

• 2023-SCOS

  Public
  Communications Biology 2023 - Measuring human cerebral blood flow and brain function with fiber-based speckle contrast optical spectroscopy system

  MATLAB

  •0•0•0•0•Updated Aug 1, 2023Aug 1, 2023

• Annotation_tools

  Public
  MATLAB applications for myelin and cell annotation of qBRM and 2P images

  MATLAB

  •0•1•0•0•Updated Jun 5, 2023Jun 5, 2023

• HomerPy

  Public
  Python

  •1•0•0•0•Updated Apr 11, 2023Apr 11, 2023

• NeurovascularCouplingStroke

  Public
  MATLAB

  •0•0•0•0•Updated Mar 10, 2023Mar 10, 2023

• capStall

  Public
  MATLAB

  •0•0•1•0•Updated Nov 21, 2022Nov 21, 2022

• DynamicSpeckleModel

  Public
  MATLAB

  •2•7•0•0•Updated Jul 25, 2022Jul 25, 2022

• BIDS-NIRS-Tapping

  Public
  Example fNIRS BIDS dataset created by Rob Luke

  6•0•0•0•Updated May 12, 2022May 12, 2022