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@BioSchemas Bioschemas

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    28 repositories

    • LearningPath-sandbox

      Public
      A sandbox for designing and annotating Learning Paths
      Jupyter Notebook
      •2•0•0•0•Updated Apr 19, 2026Apr 19, 2026

    • bioschemas.github.io

      Public
      Files for the Bioschemas website.
      biohackathon-europebiohackeu20biohackeu19
      biohackathon-europebiohackeu20biohackeu19
      HTML
      •73•20•0•3•Updated Apr 13, 2026Apr 13, 2026

    • specifications

      Public
      Issue tracker, technical wiki, and example markup
      biohackathon-europebiohackeu20biohackeu19
      biohackathon-europebiohackeu20biohackeu19
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •54•63•183•8•Updated Apr 10, 2026Apr 10, 2026

    • bioschemas-dde

      Public
      scripts for automated maintenance of bioschemas specifications in the Data Discovery Engine
      Jupyter Notebook
      •4•3•0•0•Updated Mar 20, 2026Mar 20, 2026

    • bioschemas_specification_releases

      Public
      Repository archiving types and profiles files as released on Bioschemas website
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Jun 27, 2025Jun 27, 2025

    • governance

      Public
      The governance process and code of conduct for the Bioschemas Community
      Creative Commons Zero v1.0 Universal
      •2•1•1•1•Updated Jun 26, 2025Jun 26, 2025

    • w3id.org

      Public
      Website source code for w3id.org.
      HTML
      •1.6k•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • ml-markup-tutorial

      Public
      A short tutorial on annotating machine-learning resources with Bioschemas
      0•1•0•0•Updated Jan 15, 2025Jan 15, 2025

    • bioschemas-validation

      Public
      A repository hosting Bioschemas validation tools
      validationrdfschema-org
      validationrdfschema-orgshaclshacl-shapesbioschemas
      Jupyter Notebook
      •2•2•0•0•Updated Jun 16, 2024Jun 16, 2024

    • BioschemasMarkupGenerator

      Public
      A tool for prototyping markup against the Bioschemas profiles.
      biohackathon-europebiohackeu19
      biohackathon-europebiohackeu19
      JavaScript
      •2•4•11•1•Updated Mar 23, 2024Mar 23, 2024

    • biohackathon2023-p23-report

      Public
      Elixir BioHackathon 2023 report
      TeX
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • bio.schemas.science

      Public
      redirection to the proper bioschemas website
      HTML
      •0•0•0•0•Updated May 3, 2023May 3, 2023

    • bioschemas-data-harvesting

      Public
      Details of the harvesting of Bioschemas markup from live deployments on the Web.
      webscrapingbiohackeu21
      webscrapingbiohackeu21
      Jupyter Notebook
      •4•3•2•0•Updated Dec 20, 2022Dec 20, 2022

    • BMUSE

      Public
      Bioschemas Mark Up Scraper and Extractor
      HTML
      •
      Apache License 2.0
      •5•0•0•0•Updated Dec 6, 2022Dec 6, 2022

    • schemaorg

      Public
      Schema.org - schemas and (appengine) software
      HTML
      •
      Apache License 2.0
      •916•1•0•2•Updated Dec 16, 2020Dec 16, 2020

    • ProfileGenerator

      Public
      Experimental scripts for creating a new Bioschemas Profile
      Python
      •
      MIT License
      •3•1•0•0•Updated Oct 8, 2020Oct 8, 2020

    • map2model

      Public archive
      map2model is a Python module for convert specification stored in GDrive files and generates the files needed to publish Bioschemas Types and Profiles to publish…
      Python
      •
      MIT License
      •5•1•0•0•Updated Nov 28, 2019Nov 28, 2019

    • bioschemas-goweb

      Public
      Parses an specification mapping csv to markdown ready for bioschemas.org web.
      HTML
      •
      MIT License
      •4•1•0•0•Updated Jul 31, 2019Jul 31, 2019

    • bioschemas-proteins-to-crawl

      Public archive
      A simple app displaying proteins with Bioschemas markup so a crawler can get the info.
      JavaScript
      •
      MIT License
      •4•1•0•0•Updated Jul 4, 2018Jul 4, 2018

    • bioschemas-protein-render

      Public
      Uses bioschemas-uniprot-adater to get the Bioschemas JSON LD for a UniProt accession and renders it in the simplest way
      JavaScript
      •
      MIT License
      •2•1•0•0•Updated Jun 25, 2018Jun 25, 2018

    • bioschemas-uniprot-adapter

      Public
      Adapter transforming UniProt data from web services into Bioschemas JSON-LD markup
      JavaScript
      •
      MIT License
      •2•1•0•0•Updated Jun 16, 2018Jun 16, 2018

    • bioschemas-pdbe-adapter

      Public
      Create PDBe mark up from web services
      JavaScript
      •
      MIT License
      •2•1•0•0•Updated Jun 16, 2018Jun 16, 2018

    • bioschemas-scraper

      Public archive
      Web scraper to harvest Data items using Bioschemas specifications markup.
      scrapping
      scrapping
      Python
      •
      Apache License 2.0
      •2•2•0•0•Updated Mar 15, 2018Mar 15, 2018

    • bioschemas-nutch-indexer

      Public archive
      An Apache Nutch plugin to extract and index bioschemas data from websites
      Java
      •
      Apache License 2.0
      •3•4•0•0•Updated Aug 23, 2017Aug 23, 2017

    • RubyExtractor

      Public
      Extract schema.org RDF, Microdata, or JSON-LD with this Ruby library
      Ruby
      •
      BSD 2-Clause "Simplified" License
      •2•2•0•0•Updated Jun 7, 2017Jun 7, 2017

    • bioschemas-beacons-mockup

      Public archive
      Mock-up to show how bioschemas can be used to expose, collect and integrate metadata about beacon services
      JavaScript
      •3•2•0•0•Updated Mar 22, 2017Mar 22, 2017

    • bioschemas-pyvalidator

      Public archive
      A Python Validator for Bioschemas
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Mar 8, 2017Mar 8, 2017

    • biojs-vis-bioschemas-event-list

      Public
      A visualization widget for Event data using bioschemas Event Especification
      JavaScript
      •
      MIT License
      •2•1•0•0•Updated Jan 27, 2017Jan 27, 2017
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