Repositories list

• proteoformer

  Public
  Integration ribosome profiling - mass spectrometry

  Python

  •

  GNU General Public License v3.0

  •8•15•2•0•Updated Nov 4, 2025Nov 4, 2025

• BIOCLOCK

  Public
  Code used for the BIOCLOCK pilot study.

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 14, 2025Oct 14, 2025

• maelstRom

  Public
  R

  •

  GNU Affero General Public License v3.0

  •1•0•0•0•Updated Oct 13, 2025Oct 13, 2025

• EXACT-GI

  Public
  EXpression At Cellular Transcript level – Genomic Imprinting

  R

  •0•0•0•0•Updated Sep 11, 2025Sep 11, 2025

• DeepRibo

  Public
  Python

  •

  GNU General Public License v3.0

  •5•17•0•0•Updated Feb 27, 2023Feb 27, 2023

• mQC

  Public
  Ribosome profiling mapping quality control tool

  pythonquality-controlmapping+ 6

  pythonquality-controlmappingperlribosome-profilingpyplotribosomemappingqcmqc

  Python

  •

  GNU General Public License v3.0

  •2•6•1•0•Updated Apr 20, 2021Apr 20, 2021

• proBAMconvert

  Public
  proBAMconvert, a conversion tool for peptide identification files (MzIdentML,pepXML,mzTAB) to the proBAM format

  Python

  •4•1•1•1•Updated Mar 30, 2021Mar 30, 2021

• REPARATION

  Public
  Perl

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Dec 4, 2020Dec 4, 2020

• MAGE_preprocessing

  Public
  Python

  •0•0•0•0•Updated Sep 3, 2019Sep 3, 2019

• mQC_galaxy

  Public
  Repo for the files needed for embedding mappingQC in the Galaxy environment

  wrapperquality-controlgalaxy+ 3

  wrapperquality-controlgalaxyribosome-profilingmappingqcmqc

  HTML

  •0•0•0•0•Updated Mar 8, 2018Mar 8, 2018

• RiboZINB

  Public
  RiboZinB: A tool to identifying actively translated isoform(s) from ribosome profiling data.

  Perl

  •

  Other

  •1•0•0•0•Updated Feb 8, 2018Feb 8, 2018

• Bacteria-ORFs

  Public
  Perl

  •0•0•0•0•Updated Oct 4, 2017Oct 4, 2017