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    46 repositories

    • scientific-python

      Public
      Materials for scietific pythn course
      Jupyter Notebook
      •0•1•0•0•Updated Nov 12, 2025Nov 12, 2025

    • SCHNAPPsContributions

      Public
      some contributions to the scShinyHub project
      R
      •
      GNU Lesser General Public License v2.1
      •0•6•0•0•Updated Nov 11, 2025Nov 11, 2025

    • UTechSCB-SCHNAPPs

      Public
      Shiny app for the analysis of single cell data
      R
      •
      GNU General Public License v3.0
      •2•26•1•0•Updated Nov 11, 2025Nov 11, 2025

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1.1k•0•0•1•Updated Sep 19, 2025Sep 19, 2025

    • ngphylogeny-django

      Public
      djangophylogeneticsgalaxy-projectworkflowsusegalaxy
      HTML
      •
      GNU Affero General Public License v3.0
      •24•29•2•1•Updated Apr 18, 2023Apr 18, 2023

    • Galaxy_training_material

      Public
      HTML
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Sep 28, 2021Sep 28, 2021

    • TemporaFork

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated May 23, 2021May 23, 2021

    • Tempora

      Public archive
      Pathway-based trajectory inference method for time-series scRNAseq data
      R
      •
      MIT License
      •6•0•0•0•Updated May 18, 2021May 18, 2021

    • ngphylogeny-galaxy

      Public
      Galaxy tools and workflows used in NGPhylogeny.fr
      workflowsingularitygalaxyusegalaxyphylogeny
      HTML
      •4•3•1•1•Updated Mar 29, 2021Mar 29, 2021

    • igv-webapp

      Public
      IGV Web App
      JavaScript
      •
      MIT License
      •49•1•0•0•Updated Mar 8, 2021Mar 8, 2021

    • taxo_rrna

      Public
      Creation of taxonomy Berleley DB for Silva and Greengenes 16S databases
      Python
      •
      GNU General Public License v3.0
      •2•0•0•1•Updated Jan 13, 2020Jan 13, 2020

    • FragmentAnalyser

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 30, 2019Dec 30, 2019

    • craw

      Public
      Counter RNA seq Window (CRAW) compute and visualize the coverage of RNA seq experiment.
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 5, 2019Apr 5, 2019

    • IFB-playbook

      Public
      store playbook to build IFB appliances
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Mar 20, 2019Mar 20, 2019

    • ReGaTE

      Public
      Registration of Galaxy Tools in Elixir
      Python
      •
      GNU General Public License v2.0
      •4•12•6•0•Updated Jan 7, 2019Jan 7, 2019

    • BeadArrayCNV

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 10, 2018Dec 10, 2018

    • workflows

      Public
      Community maintained workflows & tools (with examples)
      Common Workflow Language
      •
      Apache License 2.0
      •61•0•0•0•Updated May 29, 2018May 29, 2018

    • python-course-1

      Public
      python course of E2I2B
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 25, 2018May 25, 2018

    • Salmonella-CRISPR-Typing

      Public
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jan 26, 2018Jan 26, 2018

    • common-workflow-language

      Public
      Repository for CWL Specfications
      Python
      •
      Apache License 2.0
      •195•0•0•0•Updated Jan 19, 2018Jan 19, 2018

    • toil

      Public
      A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
      Python
      •
      Other
      •245•0•0•0•Updated Jan 11, 2018Jan 11, 2018

    • cwltool

      Public
      Common Workflow Language reference implementation
      Python
      •
      Apache License 2.0
      •237•0•0•0•Updated Jan 10, 2018Jan 10, 2018

    • taxo_pack

      Public
      Analyze and visualize the taxonomic abundance of set of sequences
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 4, 2017Oct 4, 2017

    • python-solutions-1

      Public
      solutions of the E2I2B python courses exercises
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Mar 9, 2017Mar 9, 2017

    • eFASTA

      Public
      eFASTA: extracting nucleotide segments from FASTA file
      Java
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated Feb 8, 2017Feb 8, 2017

    • training-material

      Public
      A collection of training material from offered Galaxy courses
      HTML
      •
      Other
      •1k•0•0•0•Updated Jan 17, 2017Jan 17, 2017

    • taxodb_ncbi

      Public
      NCBI Taxonomy Database formater
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Nov 23, 2016Nov 23, 2016

    • CoreGeneBuilder

      Public
      CoreGeneBuilder can be used to extract a core genome or a persistent genome from a given set of bacterial genomes
      Shell
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Nov 17, 2016Nov 17, 2016

    • IFB-BioShadock

      Public
      host Dockerfiles for Bioshadock
      0•0•0•0•Updated Nov 15, 2016Nov 15, 2016

    • test

      Public
      test
      Python
      •0•0•0•0•Updated Oct 21, 2016Oct 21, 2016