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@CBB752Spring2016 CBB752Spring2016

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    18 repositories

    • CBB752Spring2016.github.io

      Public
      HTML
      •4•1•0•0•Updated Jun 14, 2016Jun 14, 2016

    • mbb752_3.3_R

      Public
      R
      •0•0•0•0•Updated May 10, 2016May 10, 2016

    • mbb752_4.1_R

      Public
      C-alpha distance!
      0•0•0•0•Updated May 10, 2016May 10, 2016

    • mbb752_2.5_R

      Public
      Differential Gene Expression
      Python
      •0•0•0•0•Updated May 10, 2016May 10, 2016

    • CBB752_Final_Project_1.2

      Public
      Tool that generates “quality control statistics” from FastQ file
      Python
      •2•0•0•0•Updated May 10, 2016May 10, 2016

    • Dihedral_Angle_Calc

      Public
      Python
      •1•0•0•0•Updated May 10, 2016May 10, 2016

    • Final-Project-4.2

      Public
      1•0•0•0•Updated May 10, 2016May 10, 2016

    • Python_Distance_Calculation

      Public
      Python
      •2•0•0•0•Updated May 9, 2016May 9, 2016

    • CBB_Bioinformatics_FinalProject_4.3

      Public
      R
      •1•0•0•0•Updated May 9, 2016May 9, 2016

    • cbb752_3.3_py

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated May 9, 2016May 9, 2016

    • cbb752_2.2_py

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated May 8, 2016May 8, 2016

    • cbb752_2.2_R

      Public
      Calculate RPKM/FPKM/TPM for RNA-seq based on SAM and GTF files
      R
      •
      MIT License
      •2•0•0•0•Updated May 7, 2016May 7, 2016

    • cbb752_2.6_R

      Public
      Assess k-mer enrichment of sequences in a FASTA file
      R
      •1•0•0•0•Updated May 7, 2016May 7, 2016

    • cbb752_3.2_R

      Public
      Calculate degree centrality and betweenness centrality based on MITAB2.5 PPI file
      R
      •2•0•0•0•Updated May 7, 2016May 7, 2016

    • CBB752_3.2_centrality

      Public
      Given a MITAB gene network interaction file, find the degree and betweenness centralities of each node
      Python
      •1•0•0•0•Updated May 7, 2016May 7, 2016

    • CBB752_Final_Project_3.1

      Public
      A tool that calculates co-expressed gene network from GCT file of gene expressions.
      Python
      •3•1•0•0•Updated May 6, 2016May 6, 2016

    • CBB752_Final_Project_1.3

      Public
      a tool that trims reads based on quality score from FastQ file.
      Python
      •1•0•0•0•Updated May 6, 2016May 6, 2016

    • 2.6_kmer_enrichment

      Public
      Calculate the enrichment of a particular k-mer given a reference sequence. Also gives the p-value based on the native base-pair frequencies of the query sequenc…
      Python
      •1•0•0•0•Updated May 1, 2016May 1, 2016
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