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    20 repositories

    • agate

      Public
      Python
      •
      MIT License
      •1•0•0•4•Updated Mar 24, 2026Mar 24, 2026

    • charybdis

      Public
      Nextflow
      •
      MIT License
      •0•3•0•0•Updated Feb 25, 2026Feb 25, 2026

    • onyx-client

      Public
      CLI and Python library for Onyx
      Python
      •
      MIT License
      •2•1•3•2•Updated Feb 16, 2026Feb 16, 2026

    • roz

      Public
      CLIMB-pathogens S3 ingest solution and officious bureaucrat.
      Python
      •1•1•1•0•Updated Feb 13, 2026Feb 13, 2026

    • onyx

      Public
      API for Pathogen Metadata
      Python
      •
      GNU General Public License v3.0
      •1•3•8•11•Updated Feb 12, 2026Feb 12, 2026

    • onyx-extension

      Public
      JupyterLab Extension for the Onyx GUI
      jupyterlab-extension
      jupyterlab-extension
      TypeScript
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Feb 10, 2026Feb 10, 2026

    • jupyter-igv

      Public
      JupyterLab Extension for IGV
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Feb 10, 2026Feb 10, 2026

    • chimera

      Public
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Jan 29, 2026Jan 29, 2026

    • climb-tre.github.io

      Public
      CLIMB-TRE Documentation Website
      Python
      •3•0•0•1•Updated Jan 28, 2026Jan 28, 2026

    • onyx-gui

      Public
      Onyx Graphical User Interface
      TypeScript
      •
      GNU General Public License v3.0
      •1•2•1•5•Updated Jan 12, 2026Jan 12, 2026

    • jupyter-igv-component

      Public
      React component for IGV in JupyterLab
      TypeScript
      •
      MIT License
      •0•0•0•5•Updated Jan 8, 2026Jan 8, 2026

    • varys

      Public
      A pika based client package for rabbitMQ for use in CLIMB-tree
      Python
      •
      GNU General Public License v3.0
      •2•1•6•0•Updated Dec 8, 2025Dec 8, 2025

    • docker-images

      Public
      General CLIMB-TRE docker images
      Dockerfile
      •0•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • climb-jupyter-base

      Public
      Base functionality for CLIMB JupyterLab Extensions
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • climb-jupyter-base-component

      Public
      Base styling and utilities for CLIMB Jupyter GUIs
      TypeScript
      •
      MIT License
      •0•0•0•5•Updated Nov 20, 2025Nov 20, 2025

    • agate-gui

      Public
      TypeScript
      •1•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • zeus

      Public
      Python
      •0•0•0•0•Updated Oct 21, 2025Oct 21, 2025

    • mscape-dipi-group

      Public
      Data Integrity and Pipeline Integration Working Group for mSCAPE
      0•0•7•0•Updated Mar 6, 2025Mar 6, 2025

    • mscape-website

      Public
      Website for mSCAPE
      TypeScript
      •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • path-safe_assembler

      Public
      Nextflow
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025