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@CSB-IG Computational Systems Biology/Integrative Genomics

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    64 repositories

    • inmegen-biologia-computacional

      Public
      Repositorio con enlaces a las clases grabadas del curso Fundamentos Matemáticos de la Biología Computacional, disponibles en Vimeo.
      0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • CSB-IG.github.io

      Public
      SCSS
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Apr 13, 2026Apr 13, 2026

    • sigPCA_1.0

      Public
      Statistical significance of Principal Component Analysis based on Random Matrix Theory
      R
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • TDA_Single_Cell

      Public
      Code to perform Topological Data Analytics
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • GSE167150_HiC_networks

      Public
      Analysis of TNBC Hi-C Networks
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • sc-RNAseq-pipelines

      Public
      Pipelines for single cell RNAseq data analysis
      Python
      •
      MIT License
      •1•3•12•0•Updated May 20, 2025May 20, 2025

    • FAERS

      Public
      Download files from FAERS, and prepare data to import to a Postgresql DB, and obtain PRR.
      Python
      •1•0•0•0•Updated Apr 10, 2025Apr 10, 2025

    • EoN-Epidemics-on-Networks-

      Public
      Modeling epidemic phenomena in dynamic networks
      Python
      •0•1•0•0•Updated Apr 3, 2025Apr 3, 2025

    • GSE167150_HiC_matrices

      Public
      Workflow to run HiC-Pro on TNBC and Contralateral normal samples
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

    • FAERS-Antidepressants-ADR

      Public
      Repository for code to find ADRs in antidepressants using FAERS. Made with the help of INMEGEN.
      Jupyter Notebook
      •1•0•0•0•Updated Feb 27, 2025Feb 27, 2025

    • Periodontitis_diseasome

      Public
      Code to perform the analysis in "The molecular comorbidity network of Periodontal Disease
      R
      •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • Arabidopsis_TMR

      Public
      Transcriptional Master Regulators of mild drought in growing Arabidopsis leaves
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 22, 2024May 22, 2024

    • ROSMAP_MultiOmics

      Public
      MultiOmics exploration of ROSMAP database through network analysis
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 1, 2024Mar 1, 2024

    • MoNet-signatures

      Public
      Code repository associated to "Drug Repurposing for Basal Breast Cancer Subpopulations Using Modular Network Signatures" by H. Coria-Rodríguez, S. Ochoa, G. de …
      R
      •2•0•0•0•Updated Dec 12, 2023Dec 12, 2023

    • TF_motifs

      Public
      Code related to Rodrigo Trujillo's work on TF motifs in breast cancer
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2023Oct 13, 2023

    • Neurociecias_RedesMulticapa-Python

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 15, 2023Aug 15, 2023

    • Reformat_Table

      Public
      R code to turn a very busy table from a spreadsheet onto a number of individual text files. Each file contains the info of one row of the busy table
      R
      •0•0•0•0•Updated Jul 20, 2023Jul 20, 2023

    • SDI_PD

      Public
      Data and Code for Relationship between the Social Development Index and Self-Reported Periodontal Conditions
      R
      •0•0•0•0•Updated May 24, 2023May 24, 2023

    • ICD_Comorbidity

      Public
      Code to handle ICD-9 and ICD-10 codes, calculate Charlson indices and deploy comorbidity tables
      R
      •0•0•0•0•Updated Apr 19, 2023Apr 19, 2023

    • SGCCA

      Public
      Functional impact of multi-omic interactions in breast cancer subtypes
      HTML
      •
      MIT License
      •0•4•0•0•Updated Nov 25, 2022Nov 25, 2022

    • Word_String_Counter

      Public
      Perl_Parser_and_Counter
      Perl
      •0•0•0•0•Updated Dec 28, 2021Dec 28, 2021

    • MI-MultiOmics

      Public
      code for An information theoretical multilayer network approach to breast cancer transcriptional regulation
      R
      •0•1•0•0•Updated Dec 8, 2020Dec 8, 2020

    • KEGG-IntegratedNetwork

      Public
      This repository contains all code and results associated to the paper "The large scale structure of human metabolism reveals resilience via extensive signaling …
      Shell
      •1•0•0•0•Updated Oct 21, 2020Oct 21, 2020

    • ARACNE-multicore

      Public
      Shell
      •1•0•0•0•Updated Sep 18, 2020Sep 18, 2020

    • Update-R-with-packages

      Public
      Update R
      0•1•0•0•Updated Aug 21, 2020Aug 21, 2020

    • rnw

      Public
      regulation network workflow
      R
      •
      GNU General Public License v3.0
      •2•2•8•0•Updated Aug 11, 2020Aug 11, 2020

    • Comorbidity_Networks

      Public
      Code to built comorbidity distributions and comorbidity networks from hospital discharge EHR ICD-10 codes
      R
      •0•0•0•0•Updated Jul 11, 2020Jul 11, 2020

    • World_Covid_Reports_Death

      Public
      Analyitics of Worldwide Death Reports from COVID
      R
      •0•0•0•0•Updated Jul 9, 2020Jul 9, 2020

    • regulaciontrans-gdcmanifests

      Public
      Proyecto: Evaluación de la regulación trans en cáncer: un enfoque de biología de sistemas
      0•0•0•0•Updated Jun 12, 2020Jun 12, 2020

    • PAM50multiomics

      Public
      Multi-omic regulation of the PAM50 gene signature in breast cancer molecular subtypes
      R
      •0•0•0•0•Updated Mar 6, 2020Mar 6, 2020
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