Repositories list

• SlicerDiffusionComplexityMap

  Public
  Slice module to offer the Diffusion Complexity Map algorithm

  braindiffusion-mrimagnetic-resonance-imaging+ 2dti3d-slicer-extension

  C++

  •

  MIT License

  •1•0•1•0•Updated Oct 31, 2025Oct 31, 2025

• SlicerBrainVolumeRefinement

  Public
  3D Slicer extension for the Brain Volume Refinement methods (BVeR)

  brainmagnetic-resonance-imaging3d-slicer-extension+ 2brain-segmentationbrain-mask

  C++

  •

  Apache License 2.0

  •2•0•1•0•Updated Jan 7, 2025Jan 7, 2025

• Slicer-LesionSimulatorExtension

  Public
  3D Slicer extension that provides a toolkit for Multiple Sclerosis lesion simulation in multimodal MRI images, such as T1, T2, T2-FLAIR and DTI scalar maps.

  simulationmultiple-sclerosismagnetic-resonance-imaging+ 5lesion-simulator3d-slicer-extensiont1-weighted-mrit2-weighted-mrit2-flair-mri

  C++

  •

  Apache License 2.0

  •2•7•5•0•Updated Nov 22, 2024Nov 22, 2024

• Slicer-LesionSpotlightExtension

  Public
  3D Slicer extension that provides T2-FLAIR MRI manipulation methods in order to increase contrast and segment hyperintense Multiple Sclerosis lesions

  segmentationbrainmagnetic-resonance-imaging+ 53d-slicer-extensionbrain-segmentationlesion-segmentationt1-weighted-mrit2-flair-mri

  Python

  •

  Apache License 2.0

  •2•4•3•0•Updated Nov 22, 2024Nov 22, 2024

• AnomalousFiltersExtension

  Public
  3D Slicer extension that provides several approaches in order to apply the anomalous spatial filters on medical images.

  filteringmagnetic-resonance-imaging3d-slicer-extension+ 1anomalous-diffusion

  C++

  •

  Apache License 2.0

  •3•0•4•0•Updated Nov 22, 2024Nov 22, 2024

• ITK

  Public
  Repository to share codes implemented to run on ITK platform.

  itk

  C++

  •5•7•1•0•Updated Nov 21, 2024Nov 21, 2024

• ROBEXBrainExtraction

  Public
  3D Slicer extension to offer a brain extraction algorithm for MRI structural images. This extension has the ROBEX brain extraction implementation.

  C++

  •

  Other

  •3•7•0•0•Updated Apr 15, 2024Apr 15, 2024

• TiCCE

  Public
  Tissue Characterization and Classification Extension for 3DSlicer

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 9, 2019Sep 9, 2019

• ITKAutomaticConductanceCalculator

  Public
  Official repository to Automatic Conductance Image Calculator to ITK Remote Module.

  C++

  •

  Apache License 2.0

  •1•1•0•1•Updated Dec 9, 2018Dec 9, 2018

• ITKAnomalousDiffusionFilters

  Public
  Official repository to CSIM ITKAnomalousDiffusionFilters to ITK builds and remote repository

  C++

  •

  Apache License 2.0

  •1•0•0•1•Updated Dec 9, 2018Dec 9, 2018

• MRCardio

  Public
  3D Slicer extension that provides a set of modules of segmentation, registration and cardiac images analysis

  C++

  •1•1•0•0•Updated Dec 4, 2018Dec 4, 2018

• opencl

  Public
  Any application related to the practice of parallel computing using OPENCL

  C++

  •0•0•0•0•Updated Aug 31, 2018Aug 31, 2018

• BabyBrain

  Public
  A 3D Slicer extension for neonate/fetal brain analysis and segmentation

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Apr 13, 2018Apr 13, 2018

• ImageCharacterizationExtension

  Public
  C++

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Mar 29, 2018Mar 29, 2018

• ImageFeatureExtraction

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 28, 2018Mar 28, 2018

• Scripts

  Public
  Simples scripts and codes that are useful to the daily basis routine in a computational laboratory.

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• BrainTissuesExtension

  Public
  3D Slicer extension to segment different brain structures and tissues in MRI structural images.

  C++

  •

  Apache License 2.0

  •1•1•4•0•Updated Mar 5, 2018Mar 5, 2018

• TextureAnalysisExtension

  Public
  Extension to extract Texture Features from MRI.

  C++

  •0•0•0•0•Updated Mar 2, 2018Mar 2, 2018

• MSLesionTrackExtension

  Public
  3D Slicer extension to segment Multiple Sclerosis lesions on DTI and Structural MRI images

  dti3d-slicer-extension

  Python

  •0•0•0•0•Updated Aug 1, 2017Aug 1, 2017

• CardioCSIM

  Public
  CMake

  •0•0•0•0•Updated Jan 16, 2017Jan 16, 2017

• AnomalousDiffusionFilters

  Public
  Repository to code and documentation of Anomalous Diffusion Filter Module (Insight-Journal)

  C++

  •

  Apache License 2.0

  •1•1•1•0•Updated Nov 11, 2016Nov 11, 2016

• ImageJ

  Public
  Repository for plugins, macros and scripts available to run in ImageJ.

  Java

  •

  Creative Commons Attribution 4.0 International

  •8•4•0•0•Updated Jun 24, 2016Jun 24, 2016

• csim-toolkits.github.io

  Public
  CSIM organization website page

  CSS

  •0•0•0•0•Updated Aug 14, 2015Aug 14, 2015