Repositories list

• Seg-Model-Creation-GUI

  Public
  A user interface for nNUnet model training

  Python

  •

  BSD 2-Clause "Simplified" License

  •2•0•10•0•Updated Oct 20, 2025Oct 20, 2025

• hbcd-docs-internal

  Public
  Mermaid

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 19, 2025Oct 19, 2025

• dcan-nnunet-v2

  Public
  Python

  •

  Apache License 2.0

  •2.2k•0•0•0•Updated Oct 17, 2025Oct 17, 2025

• infant_oddball_precision_imaging

  Public
  This code repo contains the code used to create the figures in the publication "Precision Functional Neuroimaging Reveals Individually Specific Auditory Responses in Infants"

  MATLAB

  •

  MIT License

  •0•0•0•0•Updated Oct 17, 2025Oct 17, 2025

• HBCD_Data_Dictionaries

  Public
  repo to help manage hbcd data dictionaries

  2•0•0•0•Updated Oct 14, 2025Oct 14, 2025

• HBCD-MADE

  Public
  HBCD branch of the MADE pipeline for EEG preprocessing

  MATLAB

  •

  GNU General Public License v3.0

  •3•3•0•0•Updated Oct 9, 2025Oct 9, 2025

• compare_matrices_to_assign_networks

  Public
  MATLAB

  •

  Other

  •4•14•4•0•Updated Oct 7, 2025Oct 7, 2025

• infant_3T_7T_precision_imaging

  Public
  This code repo contains the code used to create the figures in the publication "Precision functional imaging in infants using multi-echo fMRI at 7T", including the code used for calculating safe power limits for scanning infants at the 7T Terra scanner at CMRR

  MATLAB

  •

  MIT License

  •0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

• BIBSnet

  Public
  This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.

  pythondeep-learningmri+ 3medical-imagingneuroimagingsegmentation

  Python

  •

  Apache License 2.0

  •9•7•16•2•Updated Oct 6, 2025Oct 6, 2025

• cdni-brain

  Public
  readthedocs for CDNI collaborators and members

  readthedocs

  2•3•29•1•Updated Oct 1, 2025Oct 1, 2025

• FaceOff

  Public
  ANTs-based commandline utilities for (1) consistent, super-fast defacing of anatomical MRI images (2) dielectric pad masking

  Shell

  •4•0•0•0•Updated Sep 29, 2025Sep 29, 2025

• abcd-hcp-pipeline

  Public
  bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

  pipelineimage-processingfmri+ 3mri-imagesbids-formatfmri-preprocessing

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •20•56•10•2•Updated Sep 25, 2025Sep 25, 2025

• infant-abcd-bids-pipeline

  Public
  Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

  dockerfilebidsapp

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •4•8•2•0•Updated Sep 25, 2025Sep 25, 2025

• nhp-abcd-bids-pipeline

  Public
  Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •6•5•5•0•Updated Sep 25, 2025Sep 25, 2025

• internal-tools

  Public
  Tools written by DCAN Labs and used, in common, by the DCAN pipelines.

  Dockerfile

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Sep 25, 2025Sep 25, 2025

• ExecutiveSummary

  Public
  quality control images / html viewer for the dcan-fmri-pipelines

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•3•0•0•Updated Sep 25, 2025Sep 25, 2025

• dcan_bold_processing

  Public
  functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •8•8•4•2•Updated Sep 25, 2025Sep 25, 2025

• nhp-abcd-bids-pipeline-synth

  Public
  Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data. Incorporates Synth, a fieldmap-less distortion correction method for fMRI.

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •6•0•0•0•Updated Sep 25, 2025Sep 25, 2025

• BrainSwipes

  Public
  A crowdsource quality assurance application for use with neuroimaging datasets.

  neuroimagingcrowdsourcingquality-assurance

  Vue

  •

  Apache License 2.0

  •1•0•13•0•Updated Sep 24, 2025Sep 24, 2025

• score-conners-3

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Sep 19, 2025Sep 19, 2025

• auto-label-emotions

  Public
  Auto-label events that happen in video files.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

• automated-subset-analysis

  Public
  Automated split-half subset reliability analysis scripts written for the ABCD resource paper.

  Python

  •1•1•0•0•Updated Sep 9, 2025Sep 9, 2025

• MCRIBS_for_MAKEGI

  Public
  Having to do a re-build of the docker image which we use for this, making an additionally git repo to track changes.

  C++

  •2•0•0•0•Updated Aug 27, 2025Aug 27, 2025

• loes-scoring-2

  Public
  Code for automated Loes scoring.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•3•0•Updated Aug 27, 2025Aug 27, 2025

• gradient-checkpointing

  Public
  A Deep Dive into Memory-Compute Trade-offs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Aug 26, 2025Aug 26, 2025

• beta-repo

  Public archive
  Python

  •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

• biceps_cmdln

  Public
  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•1•0•Updated Aug 21, 2025Aug 21, 2025

• lifespan_seg_model_data

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Aug 17, 2025Aug 17, 2025

• hbcd_mrs_to_nii_conversion

  Public
  Shell

  •0•0•0•0•Updated Aug 13, 2025Aug 13, 2025

• opendatainit-docs

  Public
  Python

  •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025