Digital Slide Archive

All

38 repositories

dive-dsa
Public
DIVE for Digital Slide Archive
Vue
•
Apache License 2.0
•0•1•7•10•Updated Mar 4, 2026Mar 4, 2026
digital_slide_archive
Public
The official deployment of the Digital Slide Archive and HistomicsTK.
hacktoberfest histology bioimage-informatics digital-slide-archive histomicstk
Python
•
Apache License 2.0
•59•134•31•0•Updated Mar 3, 2026Mar 3, 2026
ImageDePHI
Public
Python
•
Apache License 2.0
•2•10•15•0•Updated Mar 2, 2026Mar 2, 2026
HistomicsTK
Public
A Python toolkit for pathology image analysis algorithms.
python machine-learning computer-vision histology medical-image-processing bioimage-informatics digital-slide-archive
Python
•
Apache License 2.0
•127•465•25•2•Updated Mar 2, 2026Mar 2, 2026
DSA-WSI-DeID
Public
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
Python
•
Apache License 2.0
•7•18•13•0•Updated Feb 27, 2026Feb 27, 2026
HistomicsUI
Public
A Girder plugin for pathology image annotations and analysis.
python histology digital-slide-archive bioimage-infomatics
JavaScript
•
Apache License 2.0
•27•79•45•3•Updated Feb 26, 2026Feb 26, 2026
large-image-utilities
Public
Experimental utilities for use with large_image
Python
•
Apache License 2.0
•1•4•0•0•Updated Feb 12, 2026Feb 12, 2026
girder_volview
Public
Python
•
Other
•3•3•10•1•Updated Jan 15, 2026Jan 15, 2026
tifftools
Public
Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.
Python
•
Other
•6•56•3•0•Updated Jan 14, 2026Jan 14, 2026
histomicstk-similarity
Public
Identify similar tissue within an image using foundational models
Python
•
Other
•1•1•0•0•Updated Dec 19, 2025Dec 19, 2025
girder-client-mount
Public
Python
•
Apache License 2.0
•0•1•0•0•Updated Nov 24, 2025Nov 24, 2025
HistomicsStream
Public
A whole-slide image reader for TensorFlow
Python
•
Apache License 2.0
•6•24•9•0•Updated Nov 24, 2025Nov 24, 2025
superpixel-classification
Public
A test cli for classifying superpixels with arbitrary labels
hacktoberfest
Python
•
Other
•4•5•0•4•Updated Nov 24, 2025Nov 24, 2025
histomics_aws_deployment
Public
Infrastructure-as-code scripts for deploying high-availability, scalable Histomics on AWS
HCL
•1•0•5•0•Updated Nov 7, 2025Nov 7, 2025
import-tracker
Public
A Girder plugin for data import tracking in HistomicsUI
Python
•
Other
•2•2•7•1•Updated Oct 6, 2025Oct 6, 2025
girder-clamav
Public
Python
•
Other
•0•0•0•0•Updated Jul 30, 2025Jul 30, 2025
histomicstk-extras
Public
Python
•
Other
•2•1•0•0•Updated Jul 16, 2025Jul 16, 2025
histomics-label
Public
A user-interface used in conjunction with HistomicsUI to facilitate active learning on whole slide images
python histology bioimage-informatics digital-slide-archive whole-slide-annotation whole-slide-images guided-labeling
Vue
•
Other
•7•4•14•4•Updated Jun 20, 2025Jun 20, 2025
girder_assetstore
Public
A Girder plugin for connecting remote Girder instances as Assetstores
Python
•
Other
•0•0•4•0•Updated Mar 5, 2025Mar 5, 2025
ALBench
Public
Benchmarking tool for evaluating Active Learning strategies for machine learning
Python
•
Apache License 2.0
•2•5•3•0•Updated Sep 4, 2024Sep 4, 2024
histomics_load_testing
Public
HCL
•
Apache License 2.0
•0•0•3•0•Updated Jul 18, 2024Jul 18, 2024
annotation-tracker
Public
A Girder plugin for annotation tracking in HistomicsUI
JavaScript
•
Other
•0•4•2•2•Updated Feb 15, 2024Feb 15, 2024
histoqc-dsa-plugin
Public
Python
•2•1•3•0•Updated Feb 1, 2024Feb 1, 2024
dsa-run-custom-ai-models
Public
Python
•2•3•2•0•Updated Dec 15, 2023Dec 15, 2023
histomics-tour
Public
Python
•
Other
•0•0•0•2•Updated Aug 1, 2023Aug 1, 2023
large_image_source_isyntax
Public
A large_image source using the Philips library for isyntax files
Python
•
Apache License 2.0
•0•2•0•0•Updated Jun 16, 2023Jun 16, 2023
HistomicsDetect
Public
A package for cell detection models using TensorFlow
Python
•
Apache License 2.0
•1•4•10•0•Updated Mar 20, 2023Mar 20, 2023
CNNCellDetection
Public
This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images
Python
•
Apache License 2.0
•3•26•0•22•Updated Dec 8, 2022Dec 8, 2022
ImageDePHI-Phase-I
Public
Whole Slide Image Deidentification for PHI
Python
•
Apache License 2.0
•0•2•13•0•Updated Aug 27, 2021Aug 27, 2021
HTAN
Public
Python
•
Other
•1•0•4•0•Updated Jun 7, 2021Jun 7, 2021