Repositories list

• zooma2

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 5, 2026Apr 5, 2026

• ols4

  Public
  The EMBL-EBI Ontology Lookup Service (OLS)

  mcpowlembeddings+ 7

  mcpowlembeddingsknowledge-graphontologiessemantic-searchknowledge-managementknowledge-representationfair-datamcp-server

  Java

  •

  Apache License 2.0

  •37•86•83•13•Updated Apr 2, 2026Apr 2, 2026

• gwas-utils

  Public
  Collection of tools and scripts to manage GWAS Catalog related infrastructure.

  quality-controltoolboxdata-release

  quality-controltoolboxdata-release

  Python

  •3•6•9•1•Updated Apr 2, 2026Apr 2, 2026

• GrEBI

  Public
  HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

  data-miningbioinformaticsneo4j+ 5

  data-miningbioinformaticsneo4jmcpdata-integrationontologiesknowledge-graphsmcp-server

  Jupyter Notebook

  •

  Apache License 2.0

  •2•4•16•0•Updated Apr 1, 2026Apr 1, 2026

• oxo2

  Public
  A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

  Java

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 31, 2026Mar 31, 2026

• gwas-mcp

  Public
  GWAS Catalog Model Context Protocol server, supporting natural language queries of associations, studies, and traits

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

• efo

  Public
  Github repo for the Experimental Factor Ontology (EFO)

  Makefile

  •14•63•193•10•Updated Mar 30, 2026Mar 30, 2026

• gwas-curation-service

  Public
  Java

  •0•0•11•2•Updated Mar 27, 2026Mar 27, 2026

• gwas-rest-api

  Public
  Refactoring Code for Rest API

  Java

  •

  Apache License 2.0

  •0•0•3•1•Updated Mar 27, 2026Mar 27, 2026

• gwas-data-services

  Public
  Java

  •

  Apache License 2.0

  •0•0•4•0•Updated Mar 25, 2026Mar 25, 2026

• gwas-data-commons

  Public
  This repo will be having common components used across multiple services

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 24, 2026Mar 24, 2026

• gwas-ui

  Public
  JavaScript

  •

  Apache License 2.0

  •4•5•18•5•Updated Mar 24, 2026Mar 24, 2026

• gwas-curation-ui

  Public
  The New Curation Front End interface for the GWAS Catalog

  TypeScript

  •0•0•4•1•Updated Mar 19, 2026Mar 19, 2026

• gwasdepo-commons

  Public
  Java

  •

  Apache License 2.0

  •0•0•1•0•Updated Mar 19, 2026Mar 19, 2026

• goci

  Public
  GWAS Catalog Ontology and Curation Infrastructure

  Java

  •

  Apache License 2.0

  •19•26•322•9•Updated Mar 19, 2026Mar 19, 2026

• otar_profiler

  Public
  Pipeline for creating Open Targets profile and slim files from EFO.

  Ruby

  •0•4•0•0•Updated Mar 16, 2026Mar 16, 2026

• gwas-beyond-snps

  Public
  Supporting new types of genetic variation in the GWAS Catalog

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

• zooma

  Public archive
  ZOOMA - Optimal Ontology Mapping Application. http://www.ebi.ac.uk/spot/zooma.

  Java

  •

  Apache License 2.0

  •11•28•38•5•Updated Mar 8, 2026Mar 8, 2026

• gwas-sumstats-tools

  Public
  gwas-sumstats-tools

  Python

  •

  Apache License 2.0

  •1•12•5•3•Updated Mar 2, 2026Mar 2, 2026

• gwas-sumstats-service

  Public
  Summary statistics service

  Python

  •0•3•19•13•Updated Mar 2, 2026Mar 2, 2026

• gwasdepo-template-validator

  Public
  Java

  •

  Apache License 2.0

  •0•0•2•0•Updated Mar 2, 2026Mar 2, 2026

• gwasdepo-deposition-service

  Public
  Java

  •

  Apache License 2.0

  •1•0•8•4•Updated Feb 27, 2026Feb 27, 2026

• PEGASUS

  Public
  Predicted effector gene standard

  TypeScript

  •0•1•0•2•Updated Feb 26, 2026Feb 26, 2026

• ontograph

  Public
  0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

• epmc_ontology_annotator

  Public
  Python

  •0•0•0•0•Updated Feb 17, 2026Feb 17, 2026

• expose-mapping-test

  Public
  Python

  •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• gwasdepo-ingest-service

  Public
  Java

  •

  Apache License 2.0

  •0•0•1•0•Updated Feb 13, 2026Feb 13, 2026

• ols_embeddings

  Public archive
  Python

  •0•0•1•0•Updated Feb 11, 2026Feb 11, 2026

• scatlas_ontology

  Public
  SCA_Ontology

  Makefile

  •2•4•12•3•Updated Jan 19, 2026Jan 19, 2026

• gwasdepo-audit-service

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 13, 2026Jan 13, 2026