Skip to content

@EGA-archive EGA-archive

Change the repository type filter

All

    Repositories list

    69 repositories

    • beacon2-pi-api

      Public
      Beacon v2 Production Implementation (API)
      Python
      •
      Apache License 2.0
      •12•9•0•0•Updated Feb 3, 2026Feb 3, 2026

    • beacon2-ri-tools-v2

      Public
      Python
      •
      Apache License 2.0
      •12•4•6•0•Updated Feb 3, 2026Feb 3, 2026

    • beacon-template-ui

      Public
      JavaScript
      •
      Apache License 2.0
      •6•3•2•0•Updated Feb 3, 2026Feb 3, 2026

    • AF_bcftools_pipeline

      Public
      Pipeline to run QC and calculate AFs stratified by sex and ancestry using bcftools
      Nextflow
      •0•1•0•0•Updated Feb 3, 2026Feb 3, 2026

    • refgenDetector

      Public
      Tool to infer the human reference genome used to create an alignment file.
      Python
      •
      Other
      •0•1•0•0•Updated Feb 3, 2026Feb 3, 2026

    • beacon-ri-documentation

      Public
      TypeScript
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • LocalEGA

      Public
      A federated storage for sensitive data
      elixiregacrglocalegacrypt4ghega-archive
      Python
      •
      Apache License 2.0
      •21•8•0•0•Updated Feb 2, 2026Feb 2, 2026

    • EGA-beacon-browser

      Public
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 14, 2026Jan 14, 2026

    • LocalEGA-inbox

      Public
      OpenSSH dropbox, with remote user credentials and notifications for file system events
      Dockerfile
      •
      Apache License 2.0
      •1•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • LocalEGA-distribution

      Public
      Distribution system for a Federated EGA node
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • ingestionQC

      Public
      Shell
      •0•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • beacon-verifier-v2

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Dec 19, 2025Dec 19, 2025

    • FEGA-onboarding

      Public
      Collection of onboarding materials for establishing a Federated EGA Node.
      elixiregacrgebicrypt4ghega-archivefederated-ega
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •27•0•5•0•Updated Dec 18, 2025Dec 18, 2025

    • ega-biomongo-tools

      Public
      BioMongoDB is envisioned as a MongoDB database to facilitate the storage of information derived from various initiatives within the BioTeam.
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • EUCAIM-Schema

      Public
      Schema for EUCAIM beacon
      Python
      •0•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • ega-fuse-client

      Public
      A Java/JNR based FUSE virtual file system client to provide access to authorized EGA files via the EGA Data REST API (v3)
      Java
      •
      Apache License 2.0
      •7•6•0•2•Updated Nov 13, 2025Nov 13, 2025

    • allele-frequency-browser

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • QC

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • crypt4gh

      Public
      GA4GH cryptographic tools
      cryptographyegaga4ghcrgcryptography-toolscrypt4ghega-archive
      Python
      •
      Apache License 2.0
      •15•19•2•0•Updated Oct 11, 2025Oct 11, 2025

    • AF_hail_pipeline

      Public
      This pipeline generates a VCF annotated with allele frequencies stratified by ancestry and sex.
      Python
      •0•0•0•0•Updated Oct 8, 2025Oct 8, 2025

    • execution-qc-parsing

      Public
      Python
      •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • ega-scoring

      Public
      R
      •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • ega2beacon_metadata

      Public
      Converts EGA metadata to Beacon metadata
      Python
      •1•0•0•0•Updated Sep 25, 2025Sep 25, 2025

    • la-marato-browser

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • fega-metadata-schema

      Public
      Repository dedicated to the development of the Federated EGA (FEGA) metadata schemas and documentation
      MIT License
      •5•1•6•1•Updated Jun 19, 2025Jun 19, 2025

    • FEGA-Portals

      Public
      Repository to track issues about FEGA Submission (UI & API) and Helpdesk portals
      Creative Commons Attribution Share Alike 4.0 International
      •0•2•4•0•Updated Jun 12, 2025Jun 12, 2025

    • beacon-network-facade

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated May 27, 2025May 27, 2025

    • beacon2-ri-api-cancer

      Public
      Beacon v2 Cancer Reference Implementation (API)
      Python
      •
      Apache License 2.0
      •35•0•0•0•Updated May 27, 2025May 27, 2025

    • phenopackets-to-BFF

      Public
      Python
      •0•2•0•0•Updated May 23, 2025May 23, 2025

    • beacon2-ri-api

      Public
      Beacon v2 Reference Implementation (API)
      JavaScript
      •
      Apache License 2.0
      •35•18•15•11•Updated Dec 13, 2024Dec 13, 2024