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    • beacon2-pi-api

      Public
      Beacon v2 Production Implementation (API)
      Python
      12900Updated Feb 3, 2026Feb 3, 2026
    • Python
      12460Updated Feb 3, 2026Feb 3, 2026
    • JavaScript
      6320Updated Feb 3, 2026Feb 3, 2026
    • Pipeline to run QC and calculate AFs stratified by sex and ancestry using bcftools
      Nextflow
      0100Updated Feb 3, 2026Feb 3, 2026
    • Tool to infer the human reference genome used to create an alignment file.
      Python
      0100Updated Feb 3, 2026Feb 3, 2026
    • TypeScript
      1000Updated Feb 2, 2026Feb 2, 2026
    • LocalEGA

      Public
      A federated storage for sensitive data
      Python
      21800Updated Feb 2, 2026Feb 2, 2026
    • EGA-beacon-browser

      Public
      HTML
      0000Updated Jan 14, 2026Jan 14, 2026
    • OpenSSH dropbox, with remote user credentials and notifications for file system events
      Dockerfile
      1000Updated Jan 12, 2026Jan 12, 2026
    • Distribution system for a Federated EGA node
      C
      0000Updated Jan 12, 2026Jan 12, 2026
    • Shell
      0000Updated Jan 12, 2026Jan 12, 2026
    • Python
      0100Updated Dec 19, 2025Dec 19, 2025
    • Collection of onboarding materials for establishing a Federated EGA Node.
      HTML
      27050Updated Dec 18, 2025Dec 18, 2025
    • BioMongoDB is envisioned as a MongoDB database to facilitate the storage of information derived from various initiatives within the BioTeam.
      Python
      2000Updated Dec 15, 2025Dec 15, 2025
    • Schema for EUCAIM beacon
      Python
      0000Updated Dec 5, 2025Dec 5, 2025
    • A Java/JNR based FUSE virtual file system client to provide access to authorized EGA files via the EGA Data REST API (v3)
      Java
      7602Updated Nov 13, 2025Nov 13, 2025
    • JavaScript
      0000Updated Nov 13, 2025Nov 13, 2025
    • QC

      Public
      JavaScript
      0000Updated Oct 30, 2025Oct 30, 2025
    • crypt4gh

      Public
      GA4GH cryptographic tools
      Python
      151920Updated Oct 11, 2025Oct 11, 2025
    • This pipeline generates a VCF annotated with allele frequencies stratified by ancestry and sex.
      Python
      0000Updated Oct 8, 2025Oct 8, 2025
    • Python
      0000Updated Sep 26, 2025Sep 26, 2025
    • R
      0000Updated Sep 26, 2025Sep 26, 2025
    • Converts EGA metadata to Beacon metadata
      Python
      1000Updated Sep 25, 2025Sep 25, 2025
    • JavaScript
      0000Updated Sep 16, 2025Sep 16, 2025
    • Repository dedicated to the development of the Federated EGA (FEGA) metadata schemas and documentation
      5161Updated Jun 19, 2025Jun 19, 2025
    • Repository to track issues about FEGA Submission (UI & API) and Helpdesk portals
      0240Updated Jun 12, 2025Jun 12, 2025
    • JavaScript
      0000Updated May 27, 2025May 27, 2025
    • Beacon v2 Cancer Reference Implementation (API)
      Python
      35000Updated May 27, 2025May 27, 2025
    • Python
      0200Updated May 23, 2025May 23, 2025
    • Beacon v2 Reference Implementation (API)
      JavaScript
      35181511Updated Dec 13, 2024Dec 13, 2024