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    28 repositories

    • ENA-metadata-templates

      Public
      TSV and XLSX templates for submitting ENA objects (study, experiment, sample and run) using the ENA-upload-tool
      metadatatsvtemplatesxlsxenagenome-submissionena-upload
      Python
      •
      MIT License
      •4•10•1•2•Updated Jan 21, 2026Jan 21, 2026

    • elixir-toolkit-theme

      Public
      Flexible Jekyll theme using bootstrap 5 as CSS framework.
      jekyllruby-gemjekyll-themegithub-pagesjekyll-template
      SCSS
      •
      MIT License
      •21•23•19•4•Updated Jan 19, 2026Jan 19, 2026

    • ISA-merger

      Public
      A tool to merge ISA configurations and repositories attributes to be used in SEEK
      Ruby
      •2•3•10•2•Updated Dec 16, 2025Dec 16, 2025

    • elixir-toolkit-theme-example

      Public template
      Example the of ELIXIR toolkit theme as a remote Jekyll theme
      SCSS
      •21•1•0•0•Updated Dec 15, 2025Dec 15, 2025

    • elixir-toolkit-theme-plugins

      Public
      Plugins that work together with ELIXIR Toolkit theme
      Ruby
      •
      MIT License
      •2•0•1•1•Updated Dec 8, 2025Dec 8, 2025

    • datahub-test-documentation

      Public
      DataHub Test documentation repository
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • DataHub-help

      Public
      Help page for DataHub production
      HTML
      •11•1•4•0•Updated Dec 8, 2025Dec 8, 2025

    • DataHub-help-usecase

      Public
      Help page for DataHub usecase
      HTML
      •11•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • DataHub-help-test

      Public
      Help page for DataHub test
      HTML
      •11•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • rdm-guide

      Public
      This repository is used to build rdm.elixir-belgium.org.
      elixirdata-management
      SCSS
      •
      Other
      •9•4•5•0•Updated Oct 27, 2025Oct 27, 2025

    • ena-upload-cli

      Public
      ENA upload tool - script your Open Data upload to the European Nucleotide Archive
      Python
      •
      MIT License
      •17•1•1•0•Updated Jun 21, 2025Jun 21, 2025

    • seek

      Public template
      For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
      Ruby
      •
      BSD 3-Clause "New" or "Revised" License
      •58•2•10•0•Updated Mar 24, 2025Mar 24, 2025

    • rdmkit-sandbox

      Public
      ELIXIR Data Management Toolkit - Find the answers to your research data management questions here.
      Python
      •
      Other
      •146•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • isatab-validation

      Public
      Using the ISA-API to validate isa-tab files
      Python
      •
      MIT License
      •0•1•0•0•Updated Apr 4, 2024Apr 4, 2024

    • ena-upload-container

      Public
      This is a repository to build a Galaxy container which can be used to remove human traces from sequence reads and upload raw SARS-Cov-2 sequences to ENA.
      HTML
      •
      MIT License
      •2•10•0•0•Updated Mar 28, 2024Mar 28, 2024

    • infectious-diseases-toolkit-sandbox

      Public
      Infectious diseases toolkit SANDBOX
      Python
      •
      Other
      •45•0•0•0•Updated Nov 10, 2023Nov 10, 2023

    • DMPConverter

      Public
      This repository is used to build the ELIXIR Belgium generic DMP Template and the DMP Converter.
      JavaScript
      •
      MIT License
      •1•1•3•0•Updated Feb 16, 2023Feb 16, 2023

    • WES2Galaxy

      Public
      Invoking a galaxy workflow using WES schemas.
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 7, 2022Apr 7, 2022

    • Galaxy-SARS-CoV-2-sequence-upload

      Public
      This is a repository to build a Galaxy container which can be used to remove human traces from sequence reads, assemble genomes and to upload SARS-Cov-2 sequences (raw and assembled) to ENA.
      HTML
      •
      MIT License
      •0•1•0•0•Updated Feb 24, 2022Feb 24, 2022

    • brapi2biosamples

      Public
      Command Line Interface (CLI) to submit samples to BioSamples using the Breeding API (BrAPI)
      clibrapibiosamples
      Python
      •
      MIT License
      •1•2•2•0•Updated Dec 22, 2021Dec 22, 2021

    • covid-19-galaxy-container

      Public
      This repo is used to build the Covid-19 Galaxy container supporting all the genomics an cheminformatics workflows from https://github.com/galaxyproject/SARS-CoV-2
      Shell
      •
      MIT License
      •0•0•0•0•Updated Nov 6, 2020Nov 6, 2020

    • BioContainers_for_training

      Public
      Shell
      •
      MIT License
      •2•1•0•0•Updated Sep 24, 2020Sep 24, 2020

    • GCC2021

      Public
      Galaxy Community Conference 2021 documents
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 22, 2020Jul 22, 2020

    • 2019-05-15-Ghent

      Public
      4OSS workshop website
      Python
      •
      Other
      •0•0•0•0•Updated May 15, 2019May 15, 2019

    • 2019-05-13-Ghent

      Public
      workshop website
      Python
      •
      Other
      •0•0•0•0•Updated May 12, 2019May 12, 2019

    • 2019-04-16-BRU

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Feb 6, 2019Feb 6, 2019

    • ProteinPrediction2019

      Public
      0•0•0•0•Updated Dec 10, 2018Dec 10, 2018

    • elixir-belgium.github.io

      Public
      ELIXIR Belgium GitHub page
      HTML
      •0•0•0•0•Updated Nov 19, 2018Nov 19, 2018