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    17 repositories

    • trapiche

      Public
      Multi-source biome classification from text and taxonomy
      Python
      •5•6•5•1•Updated Mar 16, 2026Mar 16, 2026

    • SanntiS

      Public
      SMBGC Annotation using Neural Networks Trained on Interpro Signatures
      Python
      •
      Apache License 2.0
      •2•30•0•2•Updated Mar 9, 2026Mar 9, 2026

    • 2026_transposable_elements_cyanolichens

      Public
      Scripts for analysis presented in Cameron et al. (2026) - Transposable Element Diversification and the Evolution of Peltigerales Lichen Symbionts
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • BGCdetection_pipeline

      Public
      Nextflow pipeline for BGC detection using multiple tools
      Nextflow
      •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • plastiC

      Public
      A Snakemake workflow for recovery of plastid genomes from metagenomic samples
      Python
      •
      GNU General Public License v3.0
      •0•11•1•0•Updated Nov 16, 2024Nov 16, 2024

    • 2024_cyanobacterial_symbiont_specialization

      Public
      Details and summary inputs for the analyses for Cameron et al. (2024) Diversity and specificity of molecular functions in cyanobacterial symbionts
      Apache License 2.0
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • emeraldBGC

      Public
      SMBGC detection tool. This project has been deprecated and is no longer being maintained. All ongoing and future development has been moved to SanntiS
      Python
      •
      Apache License 2.0
      •2•1•1•1•Updated Apr 29, 2024Apr 29, 2024

    • skin_microbiome

      Public
      R
      •
      Other
      •0•0•0•0•Updated Oct 22, 2021Oct 22, 2021

    • MAG_Snakemake_wf

      Public
      Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
      HTML
      •
      Other
      •14•62•0•0•Updated Apr 18, 2021Apr 18, 2021

    • MGS-gut

      Public
      Analysing Metagenomic Species (MGS)
      R
      •
      Other
      •11•42•0•0•Updated Nov 12, 2020Nov 12, 2020

    • Tax-Benchmarking

      Public
      Benchmarking taxonomic analysis tools and databases.
      R
      •
      Other
      •3•7•0•0•Updated Nov 12, 2020Nov 12, 2020

    • Metagen-FastQC

      Public
      Wrapper to clean metagenomic reads
      Shell
      •
      Other
      •3•4•0•0•Updated Nov 12, 2020Nov 12, 2020

    • mgnify-lr

      Public
      Evaluation of long-read support for the MGnify pipeline
      Nextflow
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Sep 10, 2020Sep 10, 2020

    • mgnify-biata-2020

      Public
      Apache License 2.0
      •2•0•0•0•Updated Jul 28, 2020Jul 28, 2020

    • Taxonomy-comparison

      Public
      Repo for comparing reads taxonomy annotations between MG-RAST and MGnify
      Python
      •0•0•0•0•Updated Jul 19, 2019Jul 19, 2019

    • oral_comparison

      Public
      Comparison of oral microbiome datasets
      R
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Apr 9, 2019Apr 9, 2019

    • Microbiome

      Public
      0•0•0•0•Updated Dec 4, 2017Dec 4, 2017
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