Repositories list

• snakemake

  Public
  This is the development home of the workflow management system Snakemake. For general information, see

  Python

  •

  MIT License

  •625•0•0•0•Updated Dec 13, 2025Dec 13, 2025

• snakemake-wrappers

  Public
  This is the development home of the Snakemake wrapper repository, see

  Python

  •204•0•0•0•Updated Dec 11, 2025Dec 11, 2025

• mmaomics-sm

  Public
  A snakemake workflow to reproduce the mmaomics paper results from public data only.

  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 12, 2025Sep 12, 2025

• PROTRIDER

  Public
  Python

  •4•0•0•0•Updated Jun 18, 2025Jun 18, 2025

• bulkpy

  Public
  A helper library for managing bulk'omics data with mudata

  Python

  •

  MIT License

  •1•0•0•1•Updated May 30, 2025May 30, 2025

• mudata

  Public
  Multimodal Data (.h5mu) implementation for Python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •21•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• drop

  Public
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

  Python

  •

  MIT License

  •55•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• mthfr-and-friends

  Public
  A repository for the ap ms analysis of MTHFR

  R

  •

  MIT License

  •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• bulkR

  Public
  Helpers for multi omics bulk analyses

  R

  •

  Other

  •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• froesRtools

  Public
  What the Package Does (One Line, Title Case)

  R

  •

  MIT License

  •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• crispr-ngs-pipline

  Public archive
  A work-in-progress pipeline to identify cripsr off-target effects using somatic variant calling

  Python

  •0•0•1•0•Updated May 3, 2024May 3, 2024

• ACMGuru

  Public
  What good are standards if they are not automated?

  R

  •

  Other

  •1•0•0•0•Updated Apr 18, 2024Apr 18, 2024