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    30 repositories

    • WeightedSurv

      Public
      This repository shows the R scripts needed to implement the methodology in the manuscript "A weighted survival regression approach to incorporating external ri…
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 14, 2025Apr 14, 2025

    • cytoKernel

      Public
      R package for differential expression analyses of high-dimensional biological data
      R
      •0•2•0•0•Updated Nov 22, 2024Nov 22, 2024

    • Radiomics_paper

      Public
      Attendant code for the Radiomics paper
      HTML
      •
      MIT License
      •0•1•0•0•Updated Oct 9, 2023Oct 9, 2023

    • MMOC

      Public
      Manifold Multi-Omics Clustering
      R
      •
      Other
      •1•0•0•0•Updated Jul 13, 2023Jul 13, 2023

    • FunSpace

      Public
      1•0•0•0•Updated Apr 5, 2023Apr 5, 2023

    • NonlinearMR

      Public
      R
      •0•0•0•0•Updated Jan 8, 2023Jan 8, 2023

    • TreeKernel

      Public
      TreeKernel simulations and function
      R
      •1•0•0•0•Updated Nov 30, 2022Nov 30, 2022

    • CausalRadiomics

      Public
      Osteosarcoma radiomics dataset and attendant R code for implementing the methods in Ghosh et al., "Causal inference in radiomics: framework, mechanisms, and alg…
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated May 19, 2022May 19, 2022

    • RZV_CMI_5YrPersist

      Public
      Analysis code for "Cell-Mediated Immune Responses After Administration Of The Live Or The Recombinant Zoster Vaccine: Five-Year Persistence"
      R
      •0•0•0•0•Updated Mar 7, 2022Mar 7, 2022

    • marrShiny

      Public
      R
      •0•0•0•0•Updated Feb 17, 2022Feb 17, 2022

    • pairkat

      Public
      R
      •1•0•1•0•Updated Feb 11, 2022Feb 11, 2022

    • ITSDR

      Public
      Code for analysis in Section 5 of Ghosh, "Sufficient dimension reduction: an information-theoretic viewpoint."
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 27, 2021Dec 27, 2021

    • CODAK

      Public
      R
      •2•0•1•0•Updated Dec 11, 2021Dec 11, 2021

    • PredDir

      Public
      Description of code for paper 'Nonlinear predictive directions in clinical trials' by Cho, Zhan and Ghosh
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 3, 2021Dec 3, 2021

    • marr

      Public
      R software for Maximum Rank Reproducibility (MaRR) for high-dimensional biological data
      R
      •0•3•0•0•Updated Oct 1, 2021Oct 1, 2021

    • DenVar

      Public
      R
      •1•0•0•0•Updated Sep 27, 2021Sep 27, 2021

    • SPF

      Public
      R
      •1•0•0•0•Updated Sep 1, 2021Sep 1, 2021

    • PaIRKAT_Shiny

      Public
      R Shiny app interface for PaIRKAT algorithm
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 30, 2021Aug 30, 2021

    • RiskPredictionSIB

      Public
      This Repository contains
      R
      •0•0•0•0•Updated Jul 16, 2021Jul 16, 2021

    • OSimonScripts

      Public
      MATLAB
      •0•2•0•0•Updated Jul 4, 2021Jul 4, 2021

    • SurvRD

      Public
      R codes for regression discontinuity designs with right-censored data as described in Cho et al., "Analysis of Regression Discontinuity Designs Using Censored D…
      R
      •0•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • gateR

      Public
      Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
      R
      •
      Other
      •3•0•0•0•Updated Jan 7, 2021Jan 7, 2021

    • marr_paper_evaluations

      Public
      R scripts to reproduce results and figures in our paper applying the 'marr' procedure
      R
      •0•0•0•0•Updated Nov 9, 2020Nov 9, 2020

    • MarginBasedCausal

      Public
      R
      •1•0•0•0•Updated Sep 10, 2020Sep 10, 2020

    • cbal

      Public
      Covariate Balancing Weights with Bregman Distances
      R
      •3•0•0•0•Updated Jul 14, 2020Jul 14, 2020

    • transport-sim

      Public
      Transporting Treatment Effects with Entropy Balancing
      R
      •2•0•0•0•Updated Apr 27, 2020Apr 27, 2020

    • radtools

      Public
      R utilities for convenient extraction of medical image metadata
      R
      •
      Other
      •3•0•0•0•Updated Jan 31, 2020Jan 31, 2020

    • TCIApathfinder

      Public
      R client for The Cancer Imaging Archive REST API
      R
      •
      Other
      •5•0•0•0•Updated Nov 8, 2019Nov 8, 2019

    • WaveBH

      Public
      R code used for paper "Wavelet-based Benjamini-Hochberg procedures for multiple testing under dependence"
      R
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Apr 28, 2019Apr 28, 2019

    • RPD_PLoSOne

      Public
      This is a GitHub respository for all R code associated with the PLoS One manuscript for resistance perturbation distance and kernel machine regression
      R
      •1•0•0•0•Updated Apr 4, 2019Apr 4, 2019
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