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    31 repositories

    • Harper_et_al_2020_mustelid_diet_metabarcoding

      Public
      R
      •0•1•0•0•Updated Nov 20, 2020Nov 20, 2020

    • Harper_et_al_2018_mammal_eDNA_metabarcoding

      Public
      R
      •1•0•0•0•Updated Oct 21, 2020Oct 21, 2020

    • Harper_et_al_2018

      Public
      Jupyter Notebook
      •1•2•1•0•Updated Oct 21, 2020Oct 21, 2020

    • Harper_et_al_2020_crucian_carp_impact_invertebrates_conventional_molecular_tools

      Public
      R
      •1•1•0•0•Updated Oct 21, 2020Oct 21, 2020

    • Griffiths_et_al_2020_Fens_eDNA

      Public
      Data processing workflow and supplementary info for: Griffiths et al. (2020) - Environmental DNA metabarcoding provides enhanced detection of the European eel A…
      R
      •0•2•0•0•Updated Jul 19, 2020Jul 19, 2020

    • Curated_reference_databases

      Public
      This repository contains the complete description of how we produced the curated reference databases for the studies in Evolutionary and Environmental Genomics …
      reference-database12scytb
      reference-database12scytb
      HTML
      •2•2•0•0•Updated Jun 27, 2019Jun 27, 2019

    • Li_et_al_2019_eDNA_dynamic

      Public
      Data processing workflow and supplementary data for Li et al. 2019 - Limited dispersion and quick degradation of environmental DNA in fish ponds inferred by met…
      R
      •0•0•0•0•Updated Jun 27, 2019Jun 27, 2019

    • Handley_et_al_2019

      Public
      Data processing workflow and supplementary data for Handley et al. 2019 - Temporal and spatial variation in distribution of fish environmental DNA in England’s …
      workflowillumina-datataxonomic-assignment
      workflowillumina-datataxonomic-assignment
      Jupyter Notebook
      •0•1•1•0•Updated Jun 5, 2019Jun 5, 2019

    • Li_et_al_2019_eDNA_fish_monitoring

      Public
      Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the qu…
      lakesednametabarcoding
      lakesednametabarcoding
      R
      •0•3•0•0•Updated Jun 5, 2019Jun 5, 2019

    • metaBEAT

      Public
      Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
      Python
      •3•20•2•1•Updated Apr 17, 2019Apr 17, 2019

    • HullUni-bioinformatics.github.io

      Public
      CSS
      •0•2•0•0•Updated Feb 26, 2019Feb 26, 2019

    • Dockerize

      Public
      This repository contains contexts for Docker images build for miscellaneous pieces of bioinformatics software.
      Shell
      •0•1•0•0•Updated Jan 16, 2019Jan 16, 2019

    • Li_et_al_2018_eDNA_filtration

      Public
      Data processing workflow and supplementary data for Li et al. 2018 - The effect of filtration method on the efficiency of environmental DNA capture and quantifi…
      workflowednafiltration
      workflowednafiltrationsupplementary-dataillumina-data
      R
      •1•0•0•0•Updated May 16, 2018May 16, 2018

    • MIG-Phylogenomics

      Public
      MIG Meloidogyne species phylogenomics and and ploidy analysis
      Python
      •3•5•0•0•Updated Feb 21, 2018Feb 21, 2018

    • Kitson_et_al_NMB

      Public
      Repository contains scripts and supplementary data for Kitson et al. - Nested metabarcoding manuscript
      HTML
      •0•0•0•0•Updated Feb 2, 2018Feb 2, 2018

    • Diplotaxodon_twilight_RAD

      Public
      Data repository accompanying the paper 'The genomic basis of cichlid fish adaptation within the deep water 'twilight zone' of Lake Malawi' by Hahn et al.
      Jupyter Notebook
      •1•0•0•0•Updated Jul 31, 2017Jul 31, 2017

    • Blackman_et_al_Gfossarum_UK

      Public
      Data processing workflow and supplementary data for Blackman et al. - First record of GAMMARUS FOSSARUM (Koch, 1836) (AMPHIPODA, GAMMARIDEA) in the UK - a new n…
      UnrealScript
      •0•0•0•0•Updated Apr 5, 2017Apr 5, 2017

    • egrep-2016

      Public
      Repository for course 'Environmental Genomics Research Projects (egrep)' 2016 @EvoHull
      teaching
      teaching
      HTML
      •0•1•0•0•Updated Sep 30, 2016Sep 30, 2016

    • metabarcode-course-2016

      Public
      Data for 'Reproducible metabarcoding course' 2016 @EvoHull
      HTML
      •1•1•0•0•Updated Sep 14, 2016Sep 14, 2016

    • Nematoda-TE-Evolution

      Public
      Analysis for the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"
      Jupyter Notebook
      •5•8•0•0•Updated Sep 14, 2016Sep 14, 2016

    • TE-search-tools

      Public
      Python wrappers for programs that search for transposable elements
      Jupyter Notebook
      •6•19•0•0•Updated Jul 12, 2016Jul 12, 2016

    • genomisc-training

      Public
      Miscellaneous materials (tutorials, exercises, testdata) to develop essential 'survival'-skills in bioinformatics.
      MIT License
      •1•5•0•0•Updated Jul 4, 2016Jul 4, 2016

    • ReproPhylo

      Public
      Reproducible Phylogenomics
      Jupyter Notebook
      •4•22•24•0•Updated Jun 28, 2016Jun 28, 2016

    • Haenfling_et_al_2016

      Public
      Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data fro…
      R
      •6•6•1•0•Updated Jun 22, 2016Jun 22, 2016

    • misc

      Public
      General use python objects
      Jupyter Notebook
      •0•0•0•0•Updated May 8, 2016May 8, 2016

    • ReproPhyloDockerfile

      Public
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•4•0•0•Updated Jan 10, 2016Jan 10, 2016

    • egrep

      Public
      Repository for course 'Environmental Genomics Research Projects (egrep)'
      teaching
      teaching
      HTML
      •0•0•0•0•Updated Oct 1, 2015Oct 1, 2015

    • metabarcode-course

      Public
      EvoHull bioinformatics and metabarcoding repository
      dockerteachingmetabarcode-course
      dockerteachingmetabarcode-course
      HTML
      •0•2•0•0•Updated Jun 10, 2015Jun 10, 2015

    • Your-Species-In-GenBank

      Public
      2•1•0•0•Updated May 29, 2015May 29, 2015

    • ReproPhyloGalaxy

      Public
      A Galaxy instance with ReproPhylo tools
      Python
      •1•3•0•0•Updated Dec 4, 2014Dec 4, 2014
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