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    43 repositories

    • scipion-em-xmipp

      Public
      Plugin to use Xmipp programs within the Scipion framework
      Python
      •
      GNU General Public License v3.0
      •6•10•5•5•Updated Dec 9, 2025Dec 9, 2025

    • docs

      Public
      Documentation for the xmipp world
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • xmipp3

      Public
      Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.
      cryo-emcryoemscipion
      C++
      •
      GNU General Public License v3.0
      •16•42•5•3•Updated Dec 3, 2025Dec 3, 2025

    • emhub

      Public
      Web application for monitor EM results
      Python
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • buildbot

      Public
      buildbot setup for automated tests
      Python
      •0•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • xmipp3-installer

      Public
      Python package that handles the installation of xmipp3
      Python
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Nov 25, 2025Nov 25, 2025

    • xmipp-portal

      Public
      Python
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Nov 24, 2025Nov 24, 2025

    • xmippJavaDoc

      Public
      Xmipp Java API documentation
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • xmippPythonDoc

      Public
      Xmipp python API documentation
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • xmippDoc

      Public
      Xmipp API Documentation
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 17, 2025Nov 17, 2025

    • xmippViz

      Public
      Visualization programs and functions for Xmipp and sharing with other packages (like Scipion)
      Java
      •
      GNU General Public License v3.0
      •0•1•18•0•Updated Nov 17, 2025Nov 17, 2025

    • xmippCore

      Public
      Core functions for Xmipp and sharing with other packages (like Scipion)
      C++
      •
      GNU General Public License v3.0
      •3•4•1•0•Updated Nov 17, 2025Nov 17, 2025

    • scipion-containers

      Public
      Set of recipes to build containerised Scipion "et al" images
      Shell
      •
      GNU General Public License v3.0
      •0•3•1•1•Updated Nov 14, 2025Nov 14, 2025

    • scipion-portal

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•2•Updated Nov 5, 2025Nov 5, 2025

    • scipion-em-xmipptomo

      Public
      Xmipp tomography protocols
      Python
      •
      GNU General Public License v3.0
      •0•4•7•3•Updated Oct 30, 2025Oct 30, 2025

    • Flexutils-Scripts

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 9, 2025Oct 9, 2025

    • web-oscem-viewer

      Public
      Python
      •0•1•0•0•Updated Sep 24, 2025Sep 24, 2025

    • scipion-em-validation

      Public
      Code for the I2PC validation server
      Python
      •1•3•0•2•Updated Sep 22, 2025Sep 22, 2025

    • Flexutils-Toolkit

      Public
      Python
      •
      GNU General Public License v3.0
      •1•5•3•0•Updated Aug 21, 2025Aug 21, 2025

    • ttomotools

      Public
      Set of tools for CryoET image processing based on TeamTomo's libraries
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 25, 2025Jul 25, 2025

    • scipion-courses

      Public
      material for Scipion courses
      TeX
      •0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

    • scipion-afm

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Apr 25, 2025Apr 25, 2025

    • scipion-scripts

      Public
      Scipion sample scripts
      Python
      •1•1•0•0•Updated Oct 28, 2024Oct 28, 2024

    • scipion-em-xmippBase

      Public
      Repository to provide base protocols and functionalities to scipion-em-xmipp and scipion-em-xmippTomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • web-workflow-viewer

      Public
      HTML Workflow viewer based on workflow json files exported from Scipion.
      JavaScript
      •1•1•0•0•Updated Sep 2, 2024Sep 2, 2024

    • EMadmin

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Apr 8, 2024Apr 8, 2024

    • neoantigenPrediction

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • scipion-docker

      Public
      Dockerfile
      •
      GNU General Public License v3.0
      •2•2•0•0•Updated Nov 29, 2023Nov 29, 2023

    • libcifpp

      Public
      Library containing code to manipulate mmCIF and PDB files
      C++
      •
      BSD 2-Clause "Simplified" License
      •16•0•0•0•Updated Oct 17, 2023Oct 17, 2023

    • testDataSym

      Public
      Test data for testing symmetries
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Sep 12, 2023Sep 12, 2023