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159 repositories

GirderBIDS
Public
Girder plugin to import a BIDS database
Python
•
Apache License 2.0
•3•1•0•1•Updated Jul 10, 2026Jul 10, 2026
dicom-anonymizer
Public
Tool to anonymize DICOM files according to the DICOM standard
Python
•
BSD 3-Clause "New" or "Revised" License
•56•143•7•0•Updated Jul 10, 2026Jul 10, 2026
trame-slicer
Public
Bring the capabilities of 3D Slicer to the web with modern UI using the trame framework!
vue medical-imaging 3d-slicer
vue medical-imaging 3d-slicer trame
Python
•
Other
•24•62•15•2•Updated Jul 9, 2026Jul 9, 2026
kwneuro
Public
A Python package for building MRI analysis workflows around diffusion microstructure and structural MRI data
Python
•
Apache License 2.0
•4•2•0•0•Updated Jul 8, 2026Jul 8, 2026
GirderEEGViewer
Public
trame based viewer to visualize and annotate EEG files stored on a Girder data management platform
Python
•
Apache License 2.0
•0•1•0•0•Updated Jul 3, 2026Jul 3, 2026
GirderEEGAnnotator
Public
Python
•
Apache License 2.0
•0•0•0•1•Updated Jul 1, 2026Jul 1, 2026
SlicerVirtualReality
Public
A Slicer extension that enables user to interact with a Slicer scene using virtual reality.
cmake openvr vtk
cmake openvr vtk 3d-slicer kitware 3d-slicer-extension
C++
•
Apache License 2.0
•61•136•21•4•Updated Jun 26, 2026Jun 26, 2026
SlicerCustomAppTemplate
Public
Template to be used as a starting point for creating a custom 3D Slicer application
python c-plus-plus cross-platform
python c-plus-plus cross-platform image-processing registration segmentation vtk itk medical-image-computing 3d-slicer
C++
•
Apache License 2.0
•32•70•16•3•Updated Jun 24, 2026Jun 24, 2026
SlicerLayerDisplayableManager
Public
A 3D Slicer extension introducing a new displayable manager architecture for layered rendering and interaction handling.
3d-slicer-extension
3d-slicer-extension
C++
•
BSD 3-Clause "New" or "Revised" License
•1•4•4•0•Updated Jun 23, 2026Jun 23, 2026
ITKPhaseSymmetry
Public archive
Multi-scale Steerable Phase-Symmetry Filters for ITK
itk imaging phase-analysis
itk imaging phase-analysis itk-module
Apache License 2.0
•13•2•0•0•Updated May 27, 2026May 27, 2026
ITKStrain
Public archive
ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation.
itk strain-imaging strain-tensor
itk strain-imaging strain-tensor itk-module
Apache License 2.0
•11•10•0•0•Updated May 27, 2026May 27, 2026
ITKRLEImage
Public archive
Run-length encoded memory compression scheme for an itk::Image
run-length-encoding itk imaging
run-length-encoding itk imaging itk-module
Apache License 2.0
•10•4•0•0•Updated May 27, 2026May 27, 2026
SlicerCore
Public
CMake
•
Apache License 2.0
•3•4•6•1•Updated May 27, 2026May 27, 2026
GirderMedViewer
Public
Python
•
Other
•4•5•6•1•Updated May 26, 2026May 26, 2026
ITKContourInterpolation
Public archive
An implementation of morphological contour interpolation
segmentation interpolation-methods itk-module
segmentation interpolation-methods itk-module
C++
•
Apache License 2.0
•15•34•2•0•Updated May 19, 2026May 19, 2026
ITKMultipleImageIterator
Public archive
ITK remote module from an IJ article at http://www.insight-journal.org/browse/publication/915
itk-module
itk-module
Apache License 2.0
•6•1•0•0•Updated May 14, 2026May 14, 2026
SlicerNNUnet
Public
3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.
machine-learning medical-imaging 3d-slicer-extension
machine-learning medical-imaging 3d-slicer-extension nnunet
Python
•
BSD 3-Clause "New" or "Revised" License
•14•68•11•1•Updated May 12, 2026May 12, 2026
ITKUltrasound
Public
ITK module with classes particularly useful for ultrasound.
python c-plus-plus itk
python c-plus-plus itk ultrasound arfi scan-conversion b-mode ultrasound-tissue-characterization strain-imaging uspect
C++
•
Apache License 2.0
•23•58•13•5•Updated Apr 30, 2026Apr 30, 2026
HASI
Public
High-throughput Applications for Skeletal Imaging
Python
•
Apache License 2.0
•8•7•8•4•Updated Apr 29, 2026Apr 29, 2026
SlicerPythonTestRunner
Public
Python test runner extension for 3D Slicer based on PyTest and PyTest JSON Report
3d-slicer-extension
3d-slicer-extension
Python
•
BSD 3-Clause "New" or "Revised" License
•2•3•5•0•Updated Apr 21, 2026Apr 21, 2026
vpaw
Public
A surgical planning software system targeted to pediatric patients with airway obstruction.
3d-slicer-custom-application
3d-slicer-custom-application
Python
•
Other
•5•3•16•0•Updated Apr 2, 2026Apr 2, 2026
trame-slicer-test-data
Public
This repository contains test data for trame-slicer unit tests
1•0•0•0•Updated Mar 20, 2026Mar 20, 2026
slicer-extensions-webapp
Public
Source code of the site allowing to browse and download Slicer extensions. This site is published at extensions.slicer.org and maintained by @Kitware on behalf …
3d-slicer
3d-slicer
Vue
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Apache License 2.0
•2•2•13•14•Updated Feb 9, 2026Feb 9, 2026
SlicerTrame
Public
3D Slicer extension to launch trame-slicer server directly from 3D Slicer
3d-slicer-extension
3d-slicer-extension
Python
•
BSD 3-Clause "New" or "Revised" License
•1•7•2•0•Updated Dec 12, 2025Dec 12, 2025
volview-gtc2025-demo
Public
This demonstration showcases the integration of NVIDIA’s Clara open-source models into Kitware’s VolView platform. VolView is an open-source, clinical-grade app…
TypeScript
•
Apache License 2.0
•4•12•1•0•Updated Dec 3, 2025Dec 3, 2025
volview-insight
Public
VolView Insight is a unified platform for imaging and clinical data, providing researchers with an extensible testbed for developing, testing, and deploying mul…
Vue
•
Apache License 2.0
•3•1•0•0•Updated Nov 14, 2025Nov 14, 2025
Medical-SAM-Adapter
Public
Adapting Segment Anything Model for Medical Image Segmentation
Python
•
GNU General Public License v3.0
•126•0•0•0•Updated Nov 3, 2025Nov 3, 2025
SAM-Med2D
Public
Kitware fork of SAM-Med2D
Jupyter Notebook
•
Apache License 2.0
•110•0•0•0•Updated Oct 30, 2025Oct 30, 2025
SlicerSkeletalRepresentation
Public
Collection of Skeletal Model Extensions for 3D Slicer/SlicerSALT
3d-slicer-extension
3d-slicer-extension
Python
•
Apache License 2.0
•11•6•2•0•Updated Oct 27, 2025Oct 27, 2025
x-ray-genius
Public archive
A web-based application image generation tool that generates synthetic X-rays (DRRs) from CT scans, enabling research and AI development in orthopedics and beyo…
Python
•
Apache License 2.0
•3•8•0•0•Updated Oct 21, 2025Oct 21, 2025

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