Repositories list

• DeepLungScreening

  Public
  Python

  •22 forks•44 stars•00 issues•00 pull requests•Updated May 29, 2026May 29, 2026

• centerline2atlas

  Public
  Centerline-guided mesh registration tools for mapping deformed ex vivo organ surfaces to 3D anatomical atlases while preserving local geometry.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 27, 2026May 27, 2026

• HARFI_Singularity

  Public
  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated May 26, 2026May 26, 2026

• GeneralQATool

  Public
  non-bids QA tool

  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 22, 2026May 22, 2026

• masi-qa

  Public
  HTML

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated May 22, 2026May 22, 2026

• BeyondFA_eval

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• N-GSBSS

  Public
  Improved Gray Matter Surface based Spatial Statistics (N-GSBSS) in Neuroimaging Studies

  MATLAB

  •00 forks•99 stars•00 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• MaCRUISE

  Public
  BSD 3-Clause "New" or "Revised" License

  •11 fork•44 stars•00 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• SLANTbrainSeg

  Public
  Deep Whole Brain Segmentation Using SLANT Method

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3333 forks•130130 stars•00 issues•11 pull request•Updated May 1, 2026May 1, 2026

• Visualisation_Scripts

  Public
  My visualization scripts.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• SPIE2026_DermIDS

  Public
  Shell

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• FLAIR_Tract

  Public
  FLAIR Tractography without subject-specific anatomical context.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• Harmonized_NLST_dataset

  Public
  Repository for spatial resampling, kernel harmonization and semantic field of view extension for the National Lung Screening Trial dataset

  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• MAGCE_WMBrainChart

  Public
  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• brainstemseg_singularity

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• SATLossCustom

  Public
  modified SATLoss to fit for eye CT

  Python

  •

  MIT License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• AtlasToDiffusionReg

  Public
  singularity to register an atlas to the diffusion space of a subject

  Jupyter Notebook

  •00 forks•22 stars•11 issue•00 pull requests•Updated Mar 25, 2026Mar 25, 2026

• gsplat

  Public
  CUDA accelerated rasterization of gaussian splatting

  Python

  •

  Apache License 2.0

  •862862 forks•00 stars•00 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• Jshi-topoloss-nnunet

  Public
  custom unet with topo loss trainer, experiments?

  Python

  •

  Apache License 2.0

  •2.4k2.4k forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• xnat-staging-pipeline

  Public
  Manifest-driven pipeline to stage symlink-heavy DICOM trees into Subject/Session/Series structure, optionally zip sessions per subject, sync reliably with resum…

  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 27, 2026Feb 27, 2026

• insertion_network

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 13, 2026Feb 13, 2026

• PreQual

  Public
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images

  qualitymriassurance+ 2

  qualitymriassurancepreprocessingdiffusion

  Python

  •

  Other

  •1010 forks•5353 stars•22 issues•22 pull requests•Updated Feb 11, 2026Feb 11, 2026

• surface_distance

  Public
  Code for calculating mean absolute surface distance.

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• Informatics_ADSP

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• spherical_deep_fixel

  Public
  DeepFixel: Deep learning-based identification of crossing fiber bundle elements

  Python

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• ADSP_AutoQA

  Public
  Automated QA for ADSP processing

  Python

  •

  MIT License

  •22 forks•55 stars•22 issues•11 pull request•Updated Jan 21, 2026Jan 21, 2026

• DisCo_ext

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 18, 2025Dec 18, 2025

• BRAID

  Public
  BRain Age Identification from Diffusion MRI (BRAID)

  computer-visiondeep-learningmri

  computer-visiondeep-learningmri

  Python

  •

  Other

  •22 forks•55 stars•00 issues•00 pull requests•Updated Dec 12, 2025Dec 12, 2025

• Weather_Fetcher

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 12, 2025Nov 12, 2025

• nf-neuro-fitbir

  Public
  Roff

  •77 forks•00 stars•00 issues•00 pull requests•Updated Oct 31, 2025Oct 31, 2025