Repositories list

• MRtrix3.github.io

  Public
  Repository to hold the MRtrix3 website

  SCSS

  •3•1•1•0•Updated Oct 17, 2025Oct 17, 2025

• mrtrix3

  Public
  MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

  C++

  •

  Mozilla Public License 2.0

  •191•327•602•71•Updated Oct 16, 2025Oct 16, 2025

• test_data

  Public
  used to host data for automated testing

  Python

  •2•0•0•0•Updated Oct 14, 2025Oct 14, 2025

• script_test_data

  Public
  used to host data for testing of Python scripts

  Brainfuck

  •0•1•0•0•Updated Sep 29, 2025Sep 29, 2025

• webgpu-dawn-binaries

  Public
  0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

• conda-build

  Public
  recipe to build anaconda / miniconda MRtrix3 package

  Shell

  •1•0•2•0•Updated Jul 28, 2025Jul 28, 2025

• fetch_changelog

  Public
  Used to automate the creation of a changelog based on merge commits

  Python

  •

  Mozilla Public License 2.0

  •0•0•1•0•Updated Jul 26, 2025Jul 26, 2025

• macos-installer

  Public
  Scripts to create installer for macOS

  Shell

  •1•1•0•1•Updated Apr 30, 2025Apr 30, 2025

• mrtrix3-with3p

  Public
  A containerised version of MRtrix3 that includes third-party neuroimaging commands invoked by MRtrix3 tools

  Mozilla Public License 2.0

  •0•0•1•0•Updated Mar 12, 2025Mar 12, 2025

• mrpeek

  Public
  A medical image viewer in the terminal.

  C++

  •1•35•11•1•Updated Feb 9, 2025Feb 9, 2025

• containers

  Public
  Developer tools for generating minified containers for MRtrix3

  Dockerfile

  •2•0•4•1•Updated Jan 19, 2025Jan 19, 2025

• workshop

  Public
  Containers for software workshop material consumption

  Dockerfile

  •0•0•4•0•Updated Nov 16, 2024Nov 16, 2024

• cmdline-tutorial

  Public
  Command-line tutorial

  Mozilla Public License 2.0

  •3•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• mrtrix3-external-project-template

  Public
  0•0•1•0•Updated Aug 8, 2024Aug 8, 2024

• MinGW

  Public
  Shell

  •3•0•0•0•Updated Dec 15, 2022Dec 15, 2022

• developer-documentation

  Public
  Used purely to host MRtrix3's Doxygen-generated development documentation

  HTML

  •0•0•0•0•Updated Jul 4, 2022Jul 4, 2022

• DICOM_tests

  Public
  scripts to perform DICOM testing for MRtrix3 library

  Shell

  •0•0•0•0•Updated Mar 10, 2022Mar 10, 2022

• homebrew-mrtrix3

  Public
  homebrew formula to make installing mrtrix on OSX easier

  Ruby

  •0•1•1•0•Updated Nov 29, 2021Nov 29, 2021

• script_test_action

  Public
  Requisite files for integration of Docker container-based testing of MRtrix3 Python scripts

  Dockerfile

  •0•0•0•0•Updated Feb 8, 2021Feb 8, 2021

• MRtrix3_demo_code

  Public
  Demonstration code as included in the MRtrix3 NeuroImage 2019 paper.

  Python

  •0•0•0•0•Updated Sep 23, 2020Sep 23, 2020