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    212 repositories

    • sypres-docs

      Public
      HTML
      •
      MIT License
      •0•0•2•6•Updated Feb 26, 2026Feb 26, 2026

    • xcp_d

      Public
      Post-processing of fMRIPrep, NiBabies, and HCP outputs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •35•107•41•10•Updated Feb 26, 2026Feb 26, 2026

    • CuBIDS

      Public
      Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
      neuroscienceneuroimagingneuroinformaticspython-packagedata-curationneuroscience-methodsneuroimaging-data-sciencedata-organization
      Python
      •
      MIT License
      •13•29•46•10•Updated Feb 26, 2026Feb 26, 2026

    • transdiagnostic_executive_function

      Public
      Data resource that combines longitudinal multi-modal imaging data with rich clinical and cognitive phenotyping
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • aslprep

      Public
      Preprocessing of arterial spin labeling (ASL) data
      aslcbfbids-apps
      Python
      •
      Other
      •18•54•41•5•Updated Feb 25, 2026Feb 25, 2026

    • AI2D

      Public
      Website showcasing AI2D datasets
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • xcpd_build

      Public
      Builds a base docker image for xcp-d
      Dockerfile
      •2•2•4•0•Updated Feb 20, 2026Feb 20, 2026

    • qsirecon

      Public
      Reconstruction of preprocessed q-space images (dMRI)
      mribidsdwidiffusion-mribids-formatdmribidsappbids-apps
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•20•78•9•Updated Feb 19, 2026Feb 19, 2026

    • shafiei_timescale

      Public
      Code and documentation supporting Shafiei et al., 2026, "Mapping developmental changes in intrinsic timescale"
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • qsiprep

      Public
      Preprocessing of diffusion MRI
      pipelinesdistortion-correctionbidsmotion-correctiondiffusion-mridenoising-images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •62•178•98•11•Updated Feb 19, 2026Feb 19, 2026

    • babs

      Public
      BIDS App Bootstrap (BABS)
      Python
      •
      MIT License
      •7•12•38•3•Updated Feb 19, 2026Feb 19, 2026

    • nibs

      Public
      Myelin mapping test-retest study
      Jupyter Notebook
      •
      MIT License
      •0•1•3•1•Updated Feb 18, 2026Feb 18, 2026

    • aslprep_build

      Public
      Builds a base docker image for xcp-d
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•3•0•Updated Feb 10, 2026Feb 10, 2026

    • ITK

      Public
      Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scienti…
      C++
      •
      Apache License 2.0
      •719•0•0•1•Updated Feb 7, 2026Feb 7, 2026

    • DSI-Studio

      Public
      A Tractography Tool for Diffusion MRI
      C++
      •
      Other
      •66•1•0•0•Updated Feb 4, 2026Feb 4, 2026

    • affective-instability

      Public
      Curation and analysis code for the Affective Instability (PAFIN) dataset.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • qsiprep_build

      Public
      Builds the dependencies for qsiprep
      Python
      •
      Apache License 2.0
      •6•4•1•1•Updated Feb 3, 2026Feb 3, 2026

    • PennLINC.github.io

      Public
      Documentation for PennLINC
      HTML
      •
      MIT License
      •17•5•16•0•Updated Feb 2, 2026Feb 2, 2026

    • mebold-trt

      Public
      Code for curating and processing the MEBOLD-TRT dataset.
      Python
      •
      MIT License
      •0•0•1•0•Updated Feb 2, 2026Feb 2, 2026

    • mrtrix3

      Public
      MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractogra…
      C++
      •
      Mozilla Public License 2.0
      •196•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • nibrary

      Public
      nibrary is an evolving collection of functions designed to support research in computational neuroimaging across various imaging modalities for developing new m…
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • DSI-Studio-TRX

      Public
      A Tractography Tool for Diffusion MRI
      C++
      •
      Other
      •66•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • luo_wm_dev

      Public
      HTML
      •0•2•0•0•Updated Jan 22, 2026Jan 22, 2026

    • qsirecon_build

      Public
      Docker build for QSIRecon
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 17, 2026Jan 17, 2026

    • tractmaps

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 16, 2026Jan 16, 2026

    • figure_formatting

      Public
      PennLINC guidelines for figure formatting.
      R
      •0•0•0•0•Updated Jan 7, 2026Jan 7, 2026

    • mebold_abcd_compare_guide

      Public
      Replication guide for ME-BOLD TRT data processing
      0•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • bdt

      Public
      BIDS Derivatives Transformer
      Python
      •
      Apache License 2.0
      •0•0•2•2•Updated Jan 1, 2026Jan 1, 2026

    • grmpy_opendata

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • pNet

      Public
      pNet is a Python package for computing personalized, sparse, non-negative large-scale functional networks from functional magnetic resonance imaging (fMRI) data…
      Python
      •1•1•0•0•Updated Dec 15, 2025Dec 15, 2025