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    18 repositories

    • observatory_benchmark

      Public
      Description of the efforts towards having a comprehensive observatory of tools and their benchmarks
      benchmarkingbenchmark
      benchmarkingbenchmark
      Jupyter Notebook
      •1•8•1•0•Updated Jun 23, 2026Jun 23, 2026

    • BuildingBlocks

      Public
      This repository contains all Building Blocks developed within PerMedCoE
      Python
      •
      Apache License 2.0
      •0•3•1•1•Updated Mar 19, 2024Mar 19, 2024

    • cancer-diagnosis-workflow

      Public
      PerMedCoE use case 1: Cancer diagnosis based on omics information
      Shell
      •
      Apache License 2.0
      •0•1•0•0•Updated Feb 5, 2024Feb 5, 2024

    • cancer-invasion-workflow

      Public
      Cancer Invasion Workflow
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • covid-19-workflow

      Public
      COVID-19 multiscale modelling of the virus and patients’ tissue
      Shell
      •
      Apache License 2.0
      •0•2•0•0•Updated Jan 12, 2024Jan 12, 2024

    • permedcoe_doc

      Public
      Permedcoe package documentation
      Python
      •1•1•0•0•Updated Dec 27, 2023Dec 27, 2023

    • drug-synergies-workflow

      Public
      Shell
      •
      Apache License 2.0
      •0•0•0•1•Updated Dec 21, 2023Dec 21, 2023

    • EMBOws2023

      Public
      Repository of files for the EMBO workshop "Computational models of life: From molecular biology to digital twins" in 2023
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • single-drug-prediction-workflow

      Public
      Shell
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • permedcoe

      Public
      PerMedCoE base package
      Python
      •
      Apache License 2.0
      •0•1•3•0•Updated Nov 22, 2023Nov 22, 2023

    • summerschool-cobrexa-material

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•3•0•0•Updated Jul 19, 2023Jul 19, 2023

    • 2023summerschool-multiscale-material

      Public
      Learning material for the 2023 PerMedCoE Summer School, June 26-30 at Montanyà, Spain
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jun 29, 2023Jun 29, 2023

    • Lysozyme_in_water

      Public
      Sample application using multiple Building Blocks.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 29, 2023Jun 29, 2023

    • Curie-PerMedCoE-Summer-School-2023

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Jun 27, 2023Jun 27, 2023

    • cluster-tutorial

      Public
      https://permedcoe.github.io/cluster-tutorial/
      Other
      •0•0•0•0•Updated Feb 24, 2022Feb 24, 2022

    • hpc-links

      Public
      https://permedcoe.github.io/hpc-links/
      Other
      •0•0•0•0•Updated Feb 24, 2022Feb 24, 2022

    • mpi-in-container

      Public
      https://permedcoe.github.io/mpi-in-container
      Other
      •1•3•0•0•Updated Jan 18, 2022Jan 18, 2022

    • basic_application

      Public
      Minimal example with one Building Block.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 13, 2021May 13, 2021
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