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    50 repositories

    • argolid

      Public
      C++
      •
      MIT License
      •5•0•3•0•Updated Jan 6, 2026Jan 6, 2026

    • bfio

      Public
      Interface to the Bioformats Java library
      image-processingimage-ionapari-plugin
      Python
      •
      MIT License
      •9•13•2•4•Updated Dec 19, 2025Dec 19, 2025

    • nyxus

      Public
      A fully scalable robust image feature extraction library.
      C++
      •
      MIT License
      •10•28•4•4•Updated Dec 15, 2025Dec 15, 2025

    • bfiocpp

      Public
      C++
      •
      MIT License
      •4•2•0•0•Updated Dec 11, 2025Dec 11, 2025

    • aithena

      Public
      Main repository for all aithena projects.
      Python
      •1•1•0•0•Updated Dec 5, 2025Dec 5, 2025

    • filepattern

      Public
      Utility to extract metadata from a file name.
      Python
      •
      MIT License
      •10•5•0•0•Updated Dec 3, 2025Dec 3, 2025

    • aithena-services

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • superset

      Public
      Apache Superset is a Data Visualization and Data Exploration Platform
      TypeScript
      •
      Apache License 2.0
      •16k•0•0•1•Updated Nov 12, 2025Nov 12, 2025

    • sophios

      Public
      A domain specific language for creating scientific pipelines
      Python
      •
      MIT License
      •17•15•2•8•Updated Oct 14, 2025Oct 14, 2025

    • NMV-R-TTE-2025

      Public
      Python
      •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • microjson

      Public
      Python
      •
      Other
      •8•10•0•2•Updated Aug 26, 2025Aug 26, 2025

    • mm-workflows

      Public
      Molecular modeling workflows and extensions for workflow inference compiler
      Common Workflow Language
      •
      MIT License
      •12•5•0•5•Updated Aug 19, 2025Aug 19, 2025

    • image-workflows

      Public
      Common Workflow Language
      •
      MIT License
      •7•0•0•6•Updated Aug 19, 2025Aug 19, 2025

    • tools-templates

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • tools

      Public
      Python
      •
      MIT License
      •1•0•2•0•Updated Feb 28, 2025Feb 28, 2025

    • image-tools

      Public
      Python
      •
      MIT License
      •40•7•15•18•Updated Jan 28, 2025Jan 28, 2025

    • tabular-tools

      Public
      Python
      •
      MIT License
      •3•1•0•5•Updated Jan 28, 2025Jan 28, 2025

    • napari-nyxus

      Public
      Python
      •
      MIT License
      •3•4•1•0•Updated Dec 30, 2024Dec 30, 2024

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •340•0•0•1•Updated Dec 11, 2024Dec 11, 2024

    • deck.gl

      Public
      WebGL2 powered visualization framework
      TypeScript
      •
      MIT License
      •2.2k•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • deck.gl-community

      Public
      Community contributed modules for deck.gl
      TypeScript
      •
      MIT License
      •48•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • mm-tools

      Public
      Python
      •
      MIT License
      •3•0•0•37•Updated Nov 8, 2024Nov 8, 2024

    • jupyterlab-extensions

      Public
      Python
      •5•2•9•7•Updated Sep 12, 2024Sep 12, 2024

    • academic-rag

      Public
      MIT License
      •7•1•0•5•Updated Sep 3, 2024Sep 3, 2024

    • NVM-R-TTE

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • .github

      Public
      PolusAI Profile
      0•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • jhsingle-native-proxy

      Public
      Wrap an arbitrary webapp so it can be used in place of jupyter-singleuser in a JupyterHub setting
      Python
      •
      Apache License 2.0
      •26•0•0•1•Updated Feb 9, 2024Feb 9, 2024

    • theia

      Public
      A scalable deep learning based bleed through correction algorithm.
      Python
      •
      MIT License
      •3•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • widget-ts-cookiecutter

      Public
      A highly opinionated cookiecutter template for ipywidget extensions.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •53•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • examples

      Public
      Jupyter Notebook
      •
      MIT License
      •9•0•0•5•Updated Jan 11, 2024Jan 11, 2024