Repositories list

• ldsc

  Public
  LD Score Regression (LDSC)

  HTML

  •

  GNU General Public License v3.0

  •367•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• ProbABEL

  Public
  Tool for genome-wide association analysis of imputed genetic data.

  C++

  •4•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• PlotsOfData

  Public
  Shiny App for comparison of samples

  R

  •

  GNU General Public License v3.0

  •19•0•0•0•Updated Apr 29, 2024Apr 29, 2024

• AnnotationDbi

  Public
  Manipulation of SQLite-based annotations in Bioconductor

  R

  •10•0•0•0•Updated Mar 21, 2024Mar 21, 2024

• ncov

  Public
  Nextstrain build for novel coronavirus (nCoV)

  Python

  •

  MIT License

  •409•0•0•0•Updated Mar 17, 2020Mar 17, 2020

• jvarkit

  Public
  Java utilities for Bioinformatics

  Java

  •

  Other

  •134•0•0•0•Updated Feb 21, 2020Feb 21, 2020

• singularity

  Public
  Singularity: Application containers for Linux

  Go

  •

  BSD 3-Clause "New" or "Revised" License

  •425•0•0•0•Updated Sep 11, 2018Sep 11, 2018

• sanoid

  Public
  Policy-driven snapshot management and replication tools. Currently using ZFS for underlying next-gen storage, with explicit plans to support btrfs when btrfs becomes more reliable. Primarily intended for Linux, but BSD use is supported and reasonably frequently tested.

  Perl

  •

  GNU General Public License v3.0

  •339•0•0•0•Updated May 7, 2018May 7, 2018

• benchmarking-tools

  Public
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

  HTML

  •

  Apache License 2.0

  •46•0•0•0•Updated Feb 23, 2018Feb 23, 2018

• RVPedigree

  Public
  R

  •3•0•0•0•Updated Feb 11, 2016Feb 11, 2016

• funtooNorm

  Public
  R

  •7•0•0•0•Updated Feb 3, 2016Feb 3, 2016