SPMIC

All

55 repositories

NFACT
Public
Non-negative matrix Factorisation of Tractography data
Python
•
MIT License
•0•3•1•0•Updated Feb 27, 2026Feb 27, 2026
SBI_dMRI
Public
SBI framework for microstructural MRI models
Jupyter Notebook
•0•1•0•0•Updated Feb 27, 2026Feb 27, 2026
QuNex_Processing_Pipeline
Public
Processing pipeline for HCP-style data using the **QuNex/HCP pipeline** (without a recipe)
Shell
•0•0•0•0•Updated Feb 19, 2026Feb 19, 2026
fproc
Public
Base for simple processing pipelines
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 3, 2026Feb 3, 2026
harmonisation-with-denoising
Public
Jupyter Notebook
•0•0•1•0•Updated Jan 26, 2026Jan 26, 2026
CMC_invivo_dMRI_pipeline
Public
dMRI pipeline for in-vivo macaque data
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 14, 2026Jan 14, 2026
CMC_exvivo_dMRI_pipeline
Public
dMRI pipeline for ex-vivo macaque data
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Jan 14, 2026Jan 14, 2026
conilab
Public
Computational Neuroimaging Lab Website
SCSS
•1.3k•1•0•0•Updated Dec 24, 2025Dec 24, 2025
xnat-dicomqc
Public
XNAT container script to do simple configurable tag-based QC on scan DICOMs
Python
•1•3•0•0•Updated Dec 8, 2025Dec 8, 2025
fsort
Public
File sorter for pipeline preprocessing
Python
•
Apache License 2.0
•0•0•0•0•Updated Dec 8, 2025Dec 8, 2025
xtract
Public
Shell
•2•5•0•0•Updated Nov 26, 2025Nov 26, 2025
cudimot
Public
CUDA Diffusion Modelling Toolbox
Shell
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Other
•3•8•2•2•Updated Nov 17, 2025Nov 17, 2025
ON-Harmony_UKBB_pipeline
Public
Shell
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Other
•0•0•0•0•Updated Nov 13, 2025Nov 13, 2025
XTRACT_subcortex
Public
Tractography protocols for mapping cortico-subcortical WM tracts in the human and macaque. A part of XTRACT protocols
Other
•0•1•0•0•Updated Sep 16, 2025Sep 16, 2025
parkinsons_pipeline
Public
MATLAB
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MIT License
•0•0•0•0•Updated Sep 8, 2025Sep 8, 2025
BRC_Pipeline
Public
The BRC Pipeline scripts are being released for processing magnetic resonance imaging (MRI) data. This processing pipeline could be applied to different modalit…
Shell
•2•17•0•0•Updated Aug 19, 2025Aug 19, 2025
NFacT_v1
Public
Non-negative matrix Factorisation of Tractography data
Shell
•1•0•0•1•Updated Jul 15, 2025Jul 15, 2025
dixon_classify
Public
Simple classifier for mDIXON images
Python
•
Apache License 2.0
•0•0•0•0•Updated Jun 26, 2025Jun 26, 2025
conilab_utils
Public
A collection of useful scripts for imaging analysis etc
Shell
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GNU Affero General Public License v3.0
•1•0•0•0•Updated Jun 26, 2025Jun 26, 2025
NoddiSurfaceMapping
Public
Optimized cerebral cortical surface mapping of neurite properties using diffsion magnetic resonace imaging (dMRI)
Shell
•8•0•0•0•Updated Apr 1, 2025Apr 1, 2025
BrainAge_COVID-19
Public
This repository contains the code for brain age estimation using the UKBB data
Python
•
Apache License 2.0
•0•1•0•0•Updated Mar 18, 2025Mar 18, 2025
ON-Harmony
Public
Manuscript scripts to generate figures etc...
Jupyter Notebook
•0•0•0•0•Updated Mar 3, 2025Mar 3, 2025
aFOD
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Feb 28, 2025Feb 28, 2025
brkraw
Public
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
Python
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GNU General Public License v3.0
•30•0•0•0•Updated Nov 6, 2024Nov 6, 2024
rodent_anat
Public
Anatomical pipeline for rodent MRI based on fsl_anat interface
Python
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Apache License 2.0
•0•1•0•0•Updated Nov 6, 2024Nov 6, 2024
migtools
Public
Scripts to help handle MIG partitions of NVIDIA GPUs
Python
•0•0•0•0•Updated Apr 18, 2024Apr 18, 2024
XTRACT_Macaque_MultiTemplate
Public
XTRACT protocols for the Macaque in 5 template spaces (F99, D99, NMTv2.0, INIA, Yerkes19).
0•1•0•0•Updated Apr 17, 2024Apr 17, 2024
xtract_data
Public
HTML
•0•1•0•0•Updated Apr 17, 2024Apr 17, 2024
xnat-nott
Public
Simple XNAT helpers based around Nottingham applications
Python
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Apache License 2.0
•0•0•0•0•Updated Apr 3, 2024Apr 3, 2024
xtract_divergence
Public
0•0•0•0•Updated Feb 16, 2024Feb 16, 2024