Repositories list

• ontologies_api

  Public
  Hypermedia API for ontologies

  rubywebrdf+ 4owlontologyskoswebsemantics

  Ruby

  •

  Other

  •32•2•11•7•Updated Feb 23, 2026Feb 23, 2026

• bioportal_web_ui

  Public
  A Rails application for ontologies portal.

  railswebowl+ 4ontologyskoswebsemanticsontoportal

  Ruby

  •

  Other

  •41•6•129•8•Updated Feb 23, 2026Feb 23, 2026

• ontologies_linked_data

  Public
  Models and serializers for ontologies and related artifacts backed by 4store

  Ruby

  •

  Other

  •23•0•14•1•Updated Feb 12, 2026Feb 12, 2026

• ncboproxy

  Public
  General REST proxy architecture for the seamless extension of APIs based on the NCBO BioPortal technology

  HTML

  •

  Apache License 2.0

  •1•1•0•0•Updated Feb 9, 2026Feb 9, 2026

• project-management

  Public
  Repository used to consolidate documentation about the AgroPortal project and track content related issues.

  rubyrailsweb+ 7rdfowlontologyskosmappingswebsemanticsontoportal

  HTML

  •0•7•210•0•Updated Feb 3, 2026Feb 3, 2026

• w3id.org

  Public
  Website source code for w3id.org (with redirection to AgroPortal)

  HTML

  •1.6k•0•0•0•Updated Jan 19, 2026Jan 19, 2026

• ncbo_cron

  Public
  Jobs that run on a regular basis in the NCBO infrastructure

  Ruby

  •

  Other

  •20•0•1•4•Updated Jan 13, 2026Jan 13, 2026

• annotators

  Public
  Web service to add functionalities to the http://bioportal.bioontology.org and similar ontology annotators

  Java

  •5•5•16•1•Updated Dec 19, 2025Dec 19, 2025

• ontology_mapping_harvester

  Public
  A Java script to extract mappings from ontologies in AgroPortal (or the OntoPortal family).

  Java

  •0•0•0•2•Updated Dec 19, 2025Dec 19, 2025

• goo

  Public
  Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.

  Ruby

  •

  Other

  •15•0•3•0•Updated Jul 23, 2025Jul 23, 2025

• sparql-client

  Public
  SPARQL client for Ruby.

  Ruby

  •

  The Unlicense

  •56•0•0•0•Updated Jul 23, 2025Jul 23, 2025

• ontologies_api_ruby_client

  Public
  A Ruby client for accessing NCBO's hypermedia api

  Ruby

  •

  Other

  •13•0•0•1•Updated Jul 3, 2025Jul 3, 2025

• owlapi_wrapper

  Public
  A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.

  Java

  •12•0•0•0•Updated Jun 19, 2025Jun 19, 2025

• ontoportal_docker

  Public
  Scripts for running and developing OntoPortal with docker

  Shell

  •11•0•1•0•Updated Jun 2, 2025Jun 2, 2025

• ncbo_annotator

  Public
  To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.

  Ruby

  •

  Other

  •15•1•13•0•Updated May 10, 2025May 10, 2025

• ontoportal-docker-swarm

  Public
  Run OntoPortal API and UI using docker sawrm in a linux server

  Shell

  •1•0•0•0•Updated Apr 28, 2025Apr 28, 2025

• lov_migration

  Public
  Ruby

  •1•0•0•0•Updated Mar 17, 2025Mar 17, 2025

• fairness

  Public
  This project is a FAIRness assessment tool for ontologies, vocabularies and semantic resources.

  javaontologiesfairness-assessment+ 1semantic-resources

  Java

  •

  MIT License

  •7•21•9•1•Updated Mar 12, 2025Mar 12, 2025

• migration-to-virtuoso

  Public
  Ruby

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• ontology-profiler

  Public
  Queries and script to profile ontologies with respect to their use/reuse (at RDF statement level) of structural/metadata vocabularies or any other ontologies.

  Python

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

• ncbo_ontology_recommender

  Public
  OntoPortal Recommender which recommends relevant ontologies for text or keywords

  Ruby

  •

  Other

  •7•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• bubastis

  Public
  Bubastis is an ontology diff tool

  JavaScript

  •

  Apache License 2.0

  •4•0•0•0•Updated Sep 2, 2024Sep 2, 2024

• documentation

  Public
  Instructions for installing the OntoPortal Virtual Appliance (3.0 and later)

  SCSS

  •

  BSD 2-Clause "Simplified" License

  •11•0•0•0•Updated May 14, 2024May 14, 2024

• sssom-py

  Public
  Python toolkit for SSSOM mapping format

  Python

  •

  MIT License

  •15•0•0•0•Updated Jul 24, 2023Jul 24, 2023

• uc_Sense

  Public
  Fork created to fix ontology before inclusion in AgroPortal

  4•0•0•0•Updated Jan 24, 2023Jan 24, 2023

• ontology_mapping_graph

  Public archive
  JavaScript

  •0•0•0•0•Updated Feb 1, 2019Feb 1, 2019

• omhtrest

  Public archive
  REST Interface for Ontology Mapping Harvester Tool

  Java

  •0•0•0•0•Updated Nov 13, 2018Nov 13, 2018

• 2ndAgroHackathon

  Public archive
  Project to hots contributions of the 2nd IBC-NUMEV AgroHackathon 2017

  Java

  •0•0•0•0•Updated Jul 2, 2017Jul 2, 2017

• 1stAgroHackathon

  Public archive
  Used for communication, exchanges and code sharing during the 1st IBC-NUMEV AgroHackathon, hosted in Monptellier June 29-July 1st 2016

  Web Ontology Language

  •2•2•0•0•Updated Mar 23, 2017Mar 23, 2017