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@ai4life-opencalls AI4Life Open Calls and Open Challenges

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    27 repositories

    • oc_3_project_18

      Public
      This repository contains code for the automatic detection of nuclear pore complexes in localization microscopy.
      Jupyter Notebook
      •
      MIT License
      •2•0•0•1•Updated Apr 10, 2026Apr 10, 2026

    • oc_3_project_26

      Public
      Automatic microtubule doublet picking using nnInteractive and BiaPy
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • oc_3_project_3

      Public
      ImageJ Macro
      •0•0•0•0•Updated Apr 4, 2026Apr 4, 2026

    • oc_3_project_17

      Public
      This repository contains code for the automatic tree lumen and membrane segmentation in confocal microscopy.
      ImageJ Macro
      •
      MIT License
      •1•0•0•0•Updated Apr 4, 2026Apr 4, 2026

    • oc_3_project_11

      Public
      Python tools for stitching, denoising (Noise2Void), and analyzing 5D microscopy data of tumor spheroids in collagen. Developed as part of the AI4Life Open Call …
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Apr 4, 2026Apr 4, 2026

    • oc_2_project_13

      Public
      Application of different denoising models to Calcium Images
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 4, 2026Apr 4, 2026

    • oc_3_projec_14

      Public
      The speed of life in trees linking wood anatomy with wood lifespan and tree growth
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 4, 2026Apr 4, 2026

    • oc3_project_19

      Public
      Repo for AI4Life Open Call 3 project 19: Segmentation of sparse bacteria in human tissue
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Apr 4, 2026Apr 4, 2026

    • oc2_project_23

      Public
      0•0•0•0•Updated Apr 4, 2026Apr 4, 2026

    • oc_2_project_26

      Public
      Corresponds to AI4Life Project 26 with Jan van der Beek from the Utrecht Center for Molecular Medicine (Klumperman Group). The project aims to achieve an accur…
      Jupyter Notebook
      •1•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • .github

      Public
      0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • oc-1-project-74

      Public
      Open Call #1: Leaf tracker plant species proof
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • oc_2_project_14

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • oc_2_project_11

      Public
      Corresponds to AI4Life Project 11 with Nils Jacobsen from Royal Belgian Institute of Natural Sciences. Automated species annotation in turbid waters
      instance-segmentationmarine-biologyunderwater-images
      instance-segmentationmarine-biologyunderwater-imagessam2
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•1•0•Updated Jul 18, 2025Jul 18, 2025

    • oc_1_project_66

      Public
      Ai4Life Open Call #1 - Project #66, automated cilia detection and measurement
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • oc_1_project_10

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • oc_2_project_38

      Public
      Corresponds to AI4Life Project 38 with Katharina Hennig from Instituto de Medicina Molecular in Lisboa in Edgar Gomes Lab. A 3D human motor neuron disease platf…
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jul 16, 2025Jul 16, 2025

    • oc_1_project_52

      Public
      Plankton Organelle Segmentation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Jul 15, 2025Jul 15, 2025

    • AI4Life-CIDC25-example-submission

      Public
      Example submission for CIDC25
      Shell
      •0•0•0•0•Updated Jul 4, 2025Jul 4, 2025

    • AI4Life-MDC25-example-submission

      Public
      Python
      •0•2•0•0•Updated Jun 9, 2025Jun 9, 2025

    • oc_1_project_3

      Public
      Ai4Life Open Call #1 - Project #3, semantic segmentation of kidney and heart tissue
      imagejfijirandom-forest
      imagejfijirandom-forestsamsegmentationbioimage-analysislabkit
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 30, 2025May 30, 2025

    • oc_2_project_21

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • AI4Life-MDC24-shanetoy-solution

      Public
      Solution code for third place submission of Structured Noise 1 leaderboard by shanetoy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • oc-1-project-11

      Public
      Open Call #1: Segmentation and Tracking of Epithelial Cells
      trackingimagejsegmentation
      trackingimagejsegmentationbioimage-analysistrackmatecellpose
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • AI4Life-MDC24-example-submission

      Public
      An example of submission code and container for AI4Life-MDC24 challenge
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jul 23, 2024Jul 23, 2024

    • oc_1_project_47

      Public
      Automated detection and quantification of senescent cells
      Cool
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 29, 2024Jun 29, 2024

    • oc-1-project-6

      Public
      Open Call #1: Murine Skeletal Muscle Analysis
      imagejsegmentationbioimage-analysis
      imagejsegmentationbioimage-analysistrackmatecellpose
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
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