Related literature #8
Replies: 26 comments
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The landscape of natural product diversity and their pharmacological relevance from a focus on the Dictionary of Natural Products®https://doi.org/10.1007/s11101-019-09606-2 An analysis of the composition of the commercial DNP |
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The number of tree species on Earthhttps://doi.org/10.1073/pnas.2115329119 TODO add summary |
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Phylogenetic patterns suggest frequent multiple origins of secondary metabolites across the seed-plant ‘tree of life’https://doi.org/10.1093/nsr/nwaa105 TODO add summary |
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Comparative analysis of four medicinal floras: Phylogenetic methods to identify cross-cultural patternshttps://doi.org/10.1002/ppp3.10131 TODO add summary |
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Phylogenies reveal predictive power of traditional medicine in bioprospectinghttps://doi.org/10.1073/pnas.1202242109 TODO add summary |
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How to measure and test phylogenetic signalhttps://doi.org/10.1111/j.2041-210X.2012.00196.x TODO add summary |
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Learning to Predict Graphs with Fused Gromov-WassersteinBarycenters https://arxiv.org/abs/2202.03813 TODO add summary |
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CACONET: a novel classification framework for microbial correlation networkshttps://doi.org/10.1093/bioinformatics/btab879 TODO add summary |
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Bayesian Estimation of Speciation and Extinction from Incomplete Fossil Occurrence Datahttps://doi.org/10.1093/sysbio/syu006 TODO add summary |
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A Bayesian Approach to the Evolution of Metabolic Networks on a Phylogeny |
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The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference |
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Can phylogeny predict chemical diversity and potential medicinal activity of plants? A case study of amaryllidaceae |
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Bayesian analytical approaches for metabolomicsA PhD thesis, not exactly our goals but some aligned interests |
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Global plant diversity as a reservoir of micronutrients for humanityhttps://doi.org/10.1038/s41477-022-01100-6 TODO add summary |
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Machine learning discovery of missing links that mediate alternative branches to plant alkaloidshttps://doi.org/10.1038/s41467-022-28883-8 TODO add summary |
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Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resiliencehttps://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.18095 Summary |
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ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics |
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Predicting medicinal resources in Ranunculaceae family by a combined approach using DNA barcodes and chemical metabolites |
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A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases |
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A Bayesian Approach to Incorporating Spatiotemporal Variation and Uncertainty Limits into Modeling of Predicted Environmental Concentrations from Chemical Monitoring Campaigns |
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Bayesian Algorithm for Retrosynthesis |
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Bayesian molecular design with a chemical language model |
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Systematic Description of the Content Variation of Natural Products (NPs): To Prompt the Yield of High-Value NPs and the Discovery of New Therapeutics |
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Global probabilistic annotation of metabolic networks enables enzyme discovery |
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Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods |
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Bayesian Markov Random Field Analysis for Protein Function Prediction Based on Network Data |
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Full list
Please add your reference here when adding it as a new post.
This will allow us to track them per theme and eventually to check if read or not, etc.
Previous works:
Biodiversity:
Phylogeny:
micronutrients for humanity
Bayesian approaches and related probabilistic frameworks:
Machine Learning and Natural Products:
Graphs:
In silico LC-MS:
Quantitative NP:
Varia:
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