Repositories list

• galaxy-acceptance-tests

  Public
  Playwright acceptance tests on the AnVIL production server

  HTML

  •

  Apache License 2.0

  •0•0•3•0•Updated Dec 15, 2025Dec 15, 2025

• anvil-portal

  Public
  The NHGRI Analysis Visualization and Informatics Lab-space (AnVIL) website

  Jupyter Notebook

  •

  MIT License

  •23•2•72•46•Updated Dec 12, 2025Dec 12, 2025

• galaxy-tests

  Public
  Continuous Integration for Galaxy.

  HTML

  •6•1•3•3•Updated Dec 12, 2025Dec 12, 2025

• anvil-docker

  Public
  Docker containers for Anvil Project

  Dockerfile

  •

  MIT License

  •11•7•6•1•Updated Dec 10, 2025Dec 10, 2025

• acr-harmonized-data-model

  Public
  ACR Data Model

  Python

  •0•1•10•0•Updated Nov 18, 2025Nov 18, 2025

• ibd-king

  Public
  WDL

  •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

• drs_downloader

  Public
  Download tool for AnVIL/TDR data identified by DRS URIs and Google

  Python

  •

  Apache License 2.0

  •3•2•9•0•Updated Sep 16, 2025Sep 16, 2025

• prs-mix

  Public
  WDL

  •1•0•0•0•Updated Sep 5, 2025Sep 5, 2025

• fs.anvilfs

  Public
  Python

  •

  Apache License 2.0

  •0•3•1•0•Updated May 22, 2025May 22, 2025

• ncpi-anvil-whistle-projections

  Public
  0•0•1•0•Updated Apr 25, 2025Apr 25, 2025

• client-apis

  Public
  Clients for Python, R, javascript that interact with [terra, gen3, galaxy, others]

  Jupyter Notebook

  •

  Apache License 2.0

  •5•9•3•1•Updated Apr 24, 2025Apr 24, 2025

• anvilproject.github.io

  Public
  HTML

  •0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

• Data-Model

  Public
  This repository is dedicated to the AnVIL data model and is managed by VUMC.

  0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• galaxy

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1.1k•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• cmg-fhir-projectors

  Public
  Whistle Projectors to Load Data into FHIR

  Python

  •0•0•1•0•Updated Apr 11, 2023Apr 11, 2023

• dd-whistle

  Public
  FHIR Ingest Project for Data-Dictionaries to be Loaded Into Public FHIR Demo Server

  Python

  •0•1•0•0•Updated Feb 2, 2023Feb 2, 2023

• cvmfs-cloud-clone

  Public
  Used to clone the Galaxy tools from CVMFS to a bucket.

  Shell

  •0•0•0•0•Updated Dec 9, 2022Dec 9, 2022

• anvil-catalog-scripts

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 7, 2022Sep 7, 2022

• cmg-fhir-yale

  Public
  Whistle Projectors to Load Data into FHIR

  Python

  •0•0•0•0•Updated Jul 7, 2022Jul 7, 2022

• cmg-fhir-uw

  Public
  CMG UW Whistle Projectors to Load Data into FHIR

  0•0•0•0•Updated Jul 6, 2022Jul 6, 2022

• eMERGE-Whistle

  Public
  eMERGE Whistle projection files for transforming eMERGE dataset into FHIR

  0•0•0•0•Updated Nov 3, 2021Nov 3, 2021

• cmg-data-ingest

  Public
  Ingest scripts for the CMG dataset to FHIR

  Python

  •0•0•3•0•Updated Oct 29, 2021Oct 29, 2021

• DD-On-FHIR

  Public
  Example data-dictionary representation using FHIR Shorthand (FSH)

  GLSL

  •1•0•0•1•Updated Sep 15, 2021Sep 15, 2021

• fhir-walk

  Public
  Python

  •0•0•1•0•Updated Jul 2, 2021Jul 2, 2021

• fhirwood

  Public
  Some basic classes that can be used to consume or generate some key FHIR data types such as Coding, CodeableConcept and Range.

  Python

  •0•0•0•0•Updated Apr 6, 2021Apr 6, 2021

• anvil-portal-content

  Public
  2•0•1•0•Updated Aug 18, 2019Aug 18, 2019

• AnVIL-JIRA

  Public
  0•0•406•0•Updated Jan 11, 2019Jan 11, 2019

• anvil-testcohort

  Public
  Python

  •0•0•0•0•Updated Jan 10, 2019Jan 10, 2019

• datadictionary

  Public
  Gen3 Generic Data dictionary

  Python

  •

  Apache License 2.0

  •37•0•0•0•Updated Jan 3, 2019Jan 3, 2019