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    106 repositories

    • dandi-infrastructure

      Public
      A repository to collect docs/issues on DANDI project infrastructure for Ember
      HCL
      •
      Apache License 2.0
      •8•0•9•0•Updated Dec 2, 2025Dec 2, 2025

    • BBQS-EMBER-web

      Public
      BBQS EMBER Archive web app
      Vue
      •1•1•12•3•Updated Dec 2, 2025Dec 2, 2025

    • colocar

      Public
      tools for sparse human annotation of three-dimensional [neuroscience] datasets
      neuroscienceweb-applicationground-truthbossdbjhuaplsparse-annotations
      JavaScript
      •0•4•2•49•Updated Dec 2, 2025Dec 2, 2025

    • dandi-archive

      Public
      EMBER - DANDI API server and Web app
      Python
      •
      Apache License 2.0
      •17•2•6•1•Updated Nov 27, 2025Nov 27, 2025

    • neuvue-app

      Public
      MICrONS Proofreading App
      JavaScript
      •
      Apache License 2.0
      •2•1•14•1•Updated Nov 24, 2025Nov 24, 2025

    • npyjs

      Public
      Read numpy .npy files in JavaScript
      nodejsjavascriptnumpy3dnpyjhuaplnpy-files
      TypeScript
      •
      Apache License 2.0
      •22•94•6•0•Updated Nov 20, 2025Nov 20, 2025

    • BBQS-EMBER-Data-Model

      Public
      Core repository for the EMBER ARCHIVE
      Mermaid
      •0•0•9•2•Updated Nov 20, 2025Nov 20, 2025

    • bossypaints

      Public
      Web-based dense annotation tool for connectomics
      Svelte
      •
      Apache License 2.0
      •0•1•2•0•Updated Nov 16, 2025Nov 16, 2025

    • grand-cypher

      Public
      Implementation of the Cypher language for searching NetworkX graphs
      pythonneo4jgraphnetworkxgraph-databasenetworkscyphergrand
      Python
      •
      Apache License 2.0
      •15•123•20•3•Updated Nov 13, 2025Nov 13, 2025

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •1.1k•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • dandi-docs

      Public
      EMBER-DANDI Documentation
      17•0•4•3•Updated Oct 21, 2025Oct 21, 2025

    • motifstudio

      Public
      motifssubgraph-isomorphismbossdbgrand-graphsgrandiso
      TypeScript
      •
      Apache License 2.0
      •0•1•2•0•Updated Oct 14, 2025Oct 14, 2025

    • bossdb-collab-notebooks

      Public
      Collection of public notebooks for all projects on BossDB
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•3•0•Updated Oct 1, 2025Oct 1, 2025

    • ffn

      Public
      Flood-Filling Networks for instance segmentation in 3d volumes.
      Python
      •
      Apache License 2.0
      •102•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • neuvue-client

      Public
      python client for neuvue-queue
      Python
      •
      Apache License 2.0
      •1•3•0•0•Updated Jul 28, 2025Jul 28, 2025

    • motifstudio_client

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 27, 2025Jun 27, 2025

    • dotmotif

      Public
      A performant, powerful query framework to search for network motifs
      pythonneo4jgraphnetworkxgraph-databaseconnectomicsquery-languageconnectomemotif-discoverygraph-matching
      Python
      •
      Apache License 2.0
      •10•89•4•0•Updated Jun 19, 2025Jun 19, 2025

    • neuprint-cm

      Public
      Dockerfile
      •1•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • neuPrintHTTP

      Public
      Implements connectomics REST interface
      Go
      •2•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • bossdb-rag-chatbot

      Public
      A Language Interface to the BossDB Ecosystem
      Python
      •
      Apache License 2.0
      •0•1•5•3•Updated Jun 17, 2025Jun 17, 2025

    • bossVR

      Public
      Syglass + BossDB
      Python
      •
      Apache License 2.0
      •2•1•0•0•Updated Jun 2, 2025Jun 2, 2025

    • substrate

      Public archive
      A high-speed three.js substrate for visualizing biofidelic data
      visualizationthreejsdata-sciencejupytergraphicsjupyter-notebookdata-visualization3dsubstratejhuapl
      JavaScript
      •
      Apache License 2.0
      •1•5•7•0•Updated May 28, 2025May 28, 2025

    • grand

      Public
      Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.
      sqlserverlessgraphgraph-algorithmsgraphsneptunedynamodbnetworkxgraph-theorygraph-database
      Python
      •
      Apache License 2.0
      •8•113•6•0•Updated May 25, 2025May 25, 2025

    • neuvue-manage

      Public
      Resources and documentation to create and manage proofreading tasks on NeuVue
      Jupyter Notebook
      •
      Apache License 2.0
      •1•2•0•0•Updated Apr 7, 2025Apr 7, 2025

    • vsvi2precomputed

      Public
      Script to convert VSVI (used in VAST) image datasets to precomputed volumes
      Python
      •
      Apache License 2.0
      •0•1•3•0•Updated Mar 31, 2025Mar 31, 2025

    • campfire

      Public
      Complementary Automated Methods for Proofreading
      Python
      •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •334•1•0•1•Updated Feb 12, 2025Feb 12, 2025

    • grandiso-rust

      Public
      Rust
      •
      Apache License 2.0
      •0•0•1•0•Updated Jan 29, 2025Jan 29, 2025

    • neuromorpholib

      Public
      Python
      •
      Apache License 2.0
      •1•4•1•0•Updated Jan 10, 2025Jan 10, 2025

    • neuvue-queue

      Public
      TypeScript
      •
      Apache License 2.0
      •0•1•5•0•Updated Dec 13, 2024Dec 13, 2024