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    • peartree

      Public
      JavaScript
      MIT License
      01300Updated Mar 24, 2026Mar 24, 2026
    • A catalogue of workflow repos available for Glacier application
      0000Updated Mar 23, 2026Mar 23, 2026
    • artic-doc

      Public
      HTML
      Other
      5010Updated Mar 20, 2026Mar 20, 2026
    • raccoon

      Public
      Python
      MIT License
      0000Updated Mar 20, 2026Mar 20, 2026
    • scylla

      Public
      single sample processing
      Python
      GNU General Public License v3.0
      71063Updated Mar 19, 2026Mar 19, 2026
    • The ARTIC fieldbioinformatics pipeline
      Python
      MIT License
      9113060Updated Mar 19, 2026Mar 19, 2026
    • JavaScript
      GNU General Public License v3.0
      0000Updated Mar 13, 2026Mar 13, 2026
    • Amplicon genome assembly for ARTIC style primer schemes using Nextflow.
      Nextflow
      MIT License
      51122Updated Mar 13, 2026Mar 13, 2026
    • sealion

      Public
      Sequenece alignment viewer
      JavaScript
      Other
      0100Updated Mar 12, 2026Mar 12, 2026
    • rampart

      Public
      Read Assignment, Mapping, and Phylogenetic Analysis in Real Time
      JavaScript
      GNU General Public License v3.0
      34822817Updated Mar 2, 2026Mar 2, 2026
    • table-top

      Public
      System for delivering documents and data in an interactive training exercise
      HTML
      MIT License
      0000Updated Feb 18, 2026Feb 18, 2026
    • viz

      Public
      HTML
      0000Updated Feb 11, 2026Feb 11, 2026
    • beast-nf

      Public
      Python
      MIT License
      0000Updated Jan 8, 2026Jan 8, 2026
    • Primalscheme3. Generation of highly multiplex primerschemes
      HTML
      GNU General Public License v3.0
      92230Updated Dec 4, 2025Dec 4, 2025
    • aiv_hosts

      Public
      A mapping of avian influenza host designation to species names
      Creative Commons Zero v1.0 Universal
      0000Updated Nov 12, 2025Nov 12, 2025
    • HTML
      1500Updated Nov 6, 2025Nov 6, 2025
    • A repository of information and resources about viruses in the genus Ebolavirus
      1111Updated Oct 16, 2025Oct 16, 2025
    • Standalone version of fieldbioinformatics aligntrim. Soft clips amplicon scheme primer sites in BAM/SAM files.
      Python
      MIT License
      0160Updated Oct 16, 2025Oct 16, 2025
    • bed2idt

      Public
      Convert bedfiles to IDT custom spreadsheets
      Python
      BSD 3-Clause "New" or "Revised" License
      2400Updated Aug 22, 2025Aug 22, 2025
    • Generate a run sample sheet to input to amplicon-nf
      Nextflow
      MIT License
      0000Updated Aug 21, 2025Aug 21, 2025
    • Interactive workflow to run squirrel
      Nextflow
      GNU General Public License v3.0
      1010Updated Aug 21, 2025Aug 21, 2025
    • website

      Public
      HTML
      Other
      6301Updated Jul 24, 2025Jul 24, 2025
    • Specifications for the primer.bed and reference.fasta file.
      Typst
      MIT License
      0000Updated Jul 23, 2025Jul 23, 2025
    • ARTIC Epi2me compatible workflow and reporting
      Nextflow
      Other
      36411Updated Jun 23, 2025Jun 23, 2025
    • civet

      Public
      Cluster Investigation & Virus Epidemiology Tool
      Python
      GNU General Public License v3.0
      1450320Updated Jun 17, 2025Jun 17, 2025
    • Python
      MIT License
      4500Updated Apr 16, 2025Apr 16, 2025
    • Nextflow wrapper for RAMPART
      Nextflow
      Apache License 2.0
      0000Updated Mar 11, 2025Mar 11, 2025
    • phylofunk

      Public
      Java
      GNU General Public License v3.0
      0200Updated Mar 8, 2025Mar 8, 2025
    • aubergine

      Public
      Nextflow
      MIT License
      0000Updated Mar 7, 2025Mar 7, 2025
    • Dockerfile
      1000Updated Mar 5, 2025Mar 5, 2025