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@binhe-lab Gene Regulatory Evolution Lab @ UIowa

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    16 repositories

    • binhe-lab-pub

      Public
      lab website of Bin He, Assistant Professor of Biology at the University of Iowa
      Less
      •0•0•0•0•Updated Nov 16, 2025Nov 16, 2025

    • E036-ASR-H2O2

      Public
      Acquired Stress Resistance for H2O2, evolution of in yeasts
      HTML
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • E041-yeast-viability-assay

      Public
      This is the repository for the FungaLight Yeast Live/Dead Assay. This project uses R to analyze high dimensional flow cytometry data, and correlates flow live population with CFU survival.
      HTML
      •1•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • lab-protocols

      Public
      A collection of protocols for the lab
      SCSS
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      MIT License
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • E039-evolution-OSR

      Public
      evolution of oxidative stress resistance and response in budding yeasts
      HTML
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • C044-IDR-Evolution

      Public
      evolution of the intrinsically disordered regions (IDRs) in the eukaryotic transcription factor Pho4 in the budding yeasts
      HTML
      •0•1•0•0•Updated Jun 12, 2025Jun 12, 2025

    • C037-Cand-auris-adhesin

      Public
      HTML
      •2•1•5•0•Updated Jun 12, 2025Jun 12, 2025

    • E013-Pho4-evolution

      Public
      HTML
      •0•0•0•0•Updated Apr 26, 2025Apr 26, 2025

    • E042-CTA1-promoter-dissect

      Public
      0•0•0•0•Updated Jul 6, 2024Jul 6, 2024

    • yeast-adhesin-family-evolution

      Public
      0•0•0•0•Updated Aug 20, 2023Aug 20, 2023

    • 2023-adhesin-parallel-evolution

      Public
      repository accompanying Smoak, Lindsey et al. 2023 Genetics paper
      HTML
      •0•1•0•0•Updated Mar 15, 2023Mar 15, 2023

    • Zn-Cu-SOD-evolution

      Public
      evolution of the Zn/Cu gene family in yeasts
      0•0•0•0•Updated Apr 24, 2021Apr 24, 2021

    • Summer-2020-Nucleosome-Occupancy

      Public
      WT_No_Pi_Nucleosome_Occupancy
      HTML
      •1•0•0•0•Updated Aug 6, 2020Aug 6, 2020

    • C016-Pho4-binding-difference

      Public
      Python
      •0•0•0•0•Updated Jul 4, 2020Jul 4, 2020

    • C031-Cg-OSR-regulon

      Public
      Identify the oxidative stress response targets in _C. glabrata_; reproduce results from Roetzer et al 2011 and Kuo et al 2010
      HTML
      •1•0•0•0•Updated Dec 13, 2019Dec 13, 2019

    • E009-Pi-timecourse

      Public
      Phosphate starvation time course analysis in C. glabrata
      HTML
      •0•0•0•0•Updated Feb 16, 2019Feb 16, 2019