The Carpentries Incubator

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239 repositories

better-research-software-r
Public
Building Better Research Software R
english lesson r-language
english lesson r-language pre-alpha r-programming r-lang carpentries-incubator environment-management r-programming-language code-readability
R
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Other
•4•4•22•3•Updated Mar 11, 2026Mar 11, 2026
software-development-with-genai
Public
Developing Software with Generative AI
english lesson pre-alpha
english lesson pre-alpha carpentries-incubator genai ai-carpentry ai-carpentry-user-workshop
Dockerfile
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Other
•1•0•0•0•Updated Mar 11, 2026Mar 11, 2026
carpentries-incubator.org
Public
HTML
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Other
•6•6•1•0•Updated Mar 10, 2026Mar 10, 2026
spatial-transcriptomics
Public
Spatial Transcriptomics
beta english lesson
beta english lesson 10x-genomics spatial-transcriptomics carpentries-incubator
JavaScript
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Other
•2•0•27•0•Updated Mar 10, 2026Mar 10, 2026
julia-novice
Public
A lesson exploring the Julia language
programming julia julia-language
programming julia julia-language lesson alpha carpentries-incubator
Julia
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Other
•23•17•14•0•Updated Mar 10, 2026Mar 10, 2026
eqtl-mapping
Public
Expression Quantitative Trait Locus (eQTL) Mapping
beta gene-expression english
beta gene-expression english lesson multiparental-populations carpentries-incubator genetic-mapping
JavaScript
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Other
•0•0•7•0•Updated Mar 10, 2026Mar 10, 2026
better-research-software
Public
Building Better Research Software
beta english lesson
beta english lesson fair research-software fair-software carpentries-incubator
Python
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Other
•19•19•24•1•Updated Mar 10, 2026Mar 10, 2026
meetings-rse
Public
How to Run a Meeting
english lesson meetings
english lesson meetings pre-alpha professional-skills carpentries-incubator meetings-enhancement
Other
•1•2•6•0•Updated Mar 10, 2026Mar 10, 2026
statistical-inference-for-biology
Public
Statistical Inference for Biology
r statistics biology
r statistics biology english lesson alpha carpentries-incubator
R
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Other
•6•3•5•0•Updated Mar 10, 2026Mar 10, 2026
bioc-rnaseq
Public
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
r english bioconductor
r english bioconductor lesson rna-seq-analysis hacktoberfest pre-alpha life-sciences bulk-rna-seq carpentries-incubator
R
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Other
•44•27•23•3•Updated Mar 10, 2026Mar 10, 2026
targets-workshop
Public
Pre-alpha {targets} workshop
r reproducible-research english
r reproducible-research english lesson pre-alpha
R
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Other
•12•36•23•7•Updated Mar 10, 2026Mar 10, 2026
coding-with-llms-novice
Public
Learning to Code with Generative AI
english lesson pre-alpha
english lesson pre-alpha carpentries-incubator genai ai-carpentry ai-carpentry-user-workshop
Dockerfile
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Other
•1•0•0•2•Updated Mar 10, 2026Mar 10, 2026
byte-sized-rse-vscode
Public
Byte-Sized RSE: Code Development & Debugging with IDEs
debugging ide vscode
debugging ide vscode english lesson alpha carpentries-incubator byte-sized-rse
Dockerfile
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Other
•0•0•0•1•Updated Mar 10, 2026Mar 10, 2026
lesson-gpu-programming
Public
GPU Programming with Python and CUDA.
python programming gpu
python programming gpu beta cuda english lesson hip numba cupy
R
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Other
•13•25•9•0•Updated Mar 10, 2026Mar 10, 2026
write-readable-code
Public
how to write a code that is readable and reusable
english lesson pre-alpha
english lesson pre-alpha fair-software carpentries-incubator code-readability
Python
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Other
•0•0•0•1•Updated Mar 10, 2026Mar 10, 2026
SDC-BIDS-EEG-EEGLAB
Public
Working with EEGLAB and BIDS-EEG
programming matlab eeg
programming matlab eeg english eeg-signals neuroimaging lesson eeg-data bids pre-alpha
Other
•3•7•1•1•Updated Mar 10, 2026Mar 10, 2026
Natural-language-processing
Public
Fundamentals of natural language processing with Python
python nlp natural-language-processing
python nlp natural-language-processing english lesson pre-alpha carpentries-incubator
Jupyter Notebook
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Other
•2•6•1•2•Updated Mar 10, 2026Mar 10, 2026
efficient-computing-in-julia
Public
A lesson on efficient computing in the Julia language
julia english lesson
julia english lesson pre-alpha carpentries-incubator
Julia
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Other
•2•1•20•1•Updated Mar 10, 2026Mar 10, 2026
blogging-with-hugo-and-github-pages
Public
Carpentries Incubator lesson to learn how to build blog sites with Hugo and GitHub Pages
blog github-pages hugo
blog github-pages hugo beta hugo-site english lesson
Other
•1•3•0•1•Updated Mar 10, 2026Mar 10, 2026
good-practices-lesson
Public
Good practices in research software development (without Git)
english lesson pre-alpha
english lesson pre-alpha research-software-engineering carpentries-incubator
Other
•1•2•24•1•Updated Mar 10, 2026Mar 10, 2026
machine-learning-neural-python
Public
Introduction to artificial neural nets with Python
python machine-learning deep-learning
python machine-learning deep-learning machine beta ml english classification image-classification lesson
Other
•10•7•7•1•Updated Mar 10, 2026Mar 10, 2026
green-software-hpc
Public
Green Software Use on HPC
sustainability hpc english
sustainability hpc english lesson alpha green-computing carpentries-incubator hpc-carpentry
Python
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Other
•3•8•0•2•Updated Mar 10, 2026Mar 10, 2026
python-intermediate-development
Public
Intermediate Research Software Development Skills (Python)
python training beta
python training beta software-development lesson training-materials carpentry-lesson intermediate software-design software-engineering-research
TeX
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Other
•76•60•66•6•Updated Mar 10, 2026Mar 10, 2026
genai-implications-cp
Public
Exploring Implications of Generative AI (for competent programming practitioners)
english lesson pre-alpha
english lesson pre-alpha carpentries-incubator genai ai-carpentry ai-carpentry-user-workshop
Dockerfile
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Other
•0•0•0•1•Updated Mar 10, 2026Mar 10, 2026
docker-introduction
Public
Reproducible Computational Environments using Containers
docker education containers
docker education containers beta english lesson hacktoberfest carpentries carpentries-incubator helpwanted-list
Python
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Other
•53•53•38•8•Updated Mar 10, 2026Mar 10, 2026
ai-carpentry-user-workshop-novice
Public
AI Carpentry User Workshop for Novice Programmers
english lesson pre-alpha
english lesson pre-alpha carpentries-incubator ai-carpentry ai-carpentry-user-workshop workshop-overview
Dockerfile
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Other
•0•0•0•1•Updated Mar 10, 2026Mar 10, 2026
high-dimensional-stats-r
Public
High-dimensional statistics with R
r statistics english
r statistics english lesson pre-alpha carpentries-incubator high-dimensional-statistics
R
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Other
•19•11•1•1•Updated Mar 10, 2026Mar 10, 2026
fair-for-leaders
Public
FAIR for leaders
english lesson fair
english lesson fair pre-alpha life-sciences carpentries-incubator
Python
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Other
•0•0•0•1•Updated Mar 10, 2026Mar 10, 2026
pixi-introduction
Public
Managing Scientific Computing Environments with Pixi
beta english pixi
beta english pixi lesson carpentries-incubator environment-management
Dockerfile
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Other
•1•0•1•0•Updated Mar 10, 2026Mar 10, 2026
hermes_metadata_lesson
Public
Data and Metadata in the Humanities: Structures, Schemas, and Standards
metadata english lesson
metadata english lesson digital-humanities pre-alpha humanities carpentries-incubator
Other
•0•0•0•0•Updated Mar 10, 2026Mar 10, 2026