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    25 repositories

    • pyCERR

      Public
      Computational Environment for Radiological Research
      Python
      •
      GNU General Public License v3.0
      •6•23•0•0•Updated Nov 3, 2025Nov 3, 2025

    • MR_Rectum_GTV_SMIT

      Public
      Segments tumor GTV on MR T2 images
      Python
      •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • pyCERR-Notebooks

      Public
      Jupyter Notebook
      •3•4•0•0•Updated Oct 20, 2025Oct 20, 2025

    • CT_SwallowingAndChewing_DeepLabV3

      Public
      Python
      •1•3•0•0•Updated Oct 17, 2025Oct 17, 2025

    • CT_HeadAndNeck_OARs

      Public
      Pre-trained models for auto-segmentation of OARs on head & neck CT scans.
      Python
      •0•1•0•0•Updated Oct 16, 2025Oct 16, 2025

    • MR_HN_Nodule_SMIT

      Public
      Python
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • model_installer

      Public
      Install deep learning based models for medical image segmentation and registration.
      Shell
      •1•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • CERR

      Public
      Matlab/Octave based platform for Radiological Research.
      MATLAB
      •
      GNU Lesser General Public License v2.1
      •105•202•80•7•Updated Jul 11, 2025Jul 11, 2025

    • CT_Lung_SMIT

      Public
      Python
      •3•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • CT_HN_SMIT

      Public
      Python
      •0•0•0•0•Updated May 21, 2025May 21, 2025

    • CT_HeartSubstruct_SMIT

      Public
      Cardiac sub-structure segmentation using the SMIT model
      Python
      •3•0•0•0•Updated May 21, 2025May 21, 2025

    • fdg2fmiso_hn_pix2pix

      Public
      Convert FDG scan to TBR
      Python
      •1•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • CT_WHOLEBODY_SMITplus

      Public
      Whole body, 46-organ segmentation using the SMIT+ model
      Python
      •3•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • octave-colab

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • MR_Prostate_Deeplab

      Public
      Pre-trained model to auto-segment CTV and OARs on T2w-MRI prostate scans.
      Python
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • MRI_Pancreas_Fullshot_AnatomicCtxShape

      Public
      Longitudinal registration and OAR segmentation model for pancreas MR images.
      Jupyter Notebook
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • CT_LungOAR_incrMRRN

      Public
      Pre-trained model for auto-segmentation of OARs on lung CT scans.
      Python
      •0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • CT_cardiac_structures_deeplab

      Public
      Python
      •0•0•0•0•Updated May 13, 2024May 13, 2024

    • stratis

      Public
      Workflows for analysis of imaging and rt-dose datasets
      Jupyter Notebook
      •0•0•0•0•Updated Mar 2, 2022Mar 2, 2022

    • slicerr

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jan 20, 2022Jan 20, 2022

    • wiki-images

      Public
      0•0•0•0•Updated Jan 18, 2022Jan 18, 2022

    • cerr-docker

      Public
      Run the Octave-CERR implementation in a docker container
      MATLAB
      •2•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • autoseg_container_boilerplate

      Public
      Boilerplate example code for adapting home-brewed deep learning models to use with the CERR Auto-Segmentation Pipeline.
      Python
      •1•0•0•0•Updated Mar 30, 2021Mar 30, 2021

    • dl_segmentation

      Public
      Wrappers for deep-learning based segmentation models and network wrights
      GNU General Public License v3.0
      •0•2•0•0•Updated Sep 8, 2020Sep 8, 2020

    • MSK_MedPhys_Biomed

      Public
      0•0•0•0•Updated Apr 8, 2020Apr 8, 2020