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    50 repositories

    • yggdrasil-python-rapidjson

      Public
      C++
      •
      Other
      •0•0•0•1•Updated Jul 10, 2026Jul 10, 2026

    • yggdrasil-rapidjson

      Public
      C++
      •
      Other
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • hothouse

      Public
      Python
      •
      MIT License
      •3•0•0•5•Updated Jun 11, 2026Jun 11, 2026

    • ePhotosynthesis_C

      Public
      C++
      •
      Other
      •1•0•0•0•Updated May 7, 2026May 7, 2026

    • yggdrasil

      Public
      A framework for connecting scientific models across languages and scales.
      Python
      •
      Other
      •23•36•12•2•Updated Apr 14, 2026Apr 14, 2026

    • ePhotosynthesis

      Public
      MATLAB
      •
      GNU General Public License v2.0
      •0•2•0•0•Updated Feb 2, 2026Feb 2, 2026

    • BML-yggdrasil

      Public
      C++
      •
      Other
      •1•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6.2k•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • rapidjson

      Public
      A fast JSON parser/generator for C++ with both SAX/DOM style API
      C++
      •
      Other
      •3.6k•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • python-rapidjson

      Public
      Python wrapper around rapidjson
      C++
      •
      Other
      •53•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • example-fakemodel

      Public template
      A fake model for use in testing and examples.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 15, 2025May 15, 2025

    • yggdrasil_models

      Public
      Catalog of models registered via the submission form located at https://yggdrasil-models.onrender.com
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated May 9, 2025May 9, 2025

    • Soybean-BioCro

      Public
      R
      •1•2•1•0•Updated Oct 9, 2024Oct 9, 2024

    • yggdrasil_models_test

      Public
      Repo for testing https://yggdrasil-models.onrender.com submission
      1•0•0•1•Updated Sep 30, 2024Sep 30, 2024

    • tissue-specific-FBA-models

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 7, 2023Nov 7, 2023

    • jupyterlab_nodeeditor

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•6•13•1•Updated Oct 1, 2023Oct 1, 2023

    • C3-metabolic-and-leaf-model

      Public
      MATLAB
      •3•0•0•0•Updated Sep 11, 2023Sep 11, 2023

    • nodeeditor-controls

      Public
      Vue
      •1•0•0•0•Updated Jun 27, 2023Jun 27, 2023

    • AIFoundry-2023

      Public
      Materials used in the yggdrasil demonstration at the AI Foundry short course in 2023
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jun 9, 2023Jun 9, 2023

    • Soybean-Sensitivity

      Public
      R
      •0•0•0•0•Updated Mar 31, 2023Mar 31, 2023

    • FSPM2020_yggdrasil_workshop

      Public
      Materials for the FSPM2020 yggdrasil workshop
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 3, 2023Feb 3, 2023

    • r-base-feedstock

      Public
      A conda-smithy repository for r-base.
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •49•0•0•0•Updated Jan 20, 2023Jan 20, 2023

    • SorghumVoxelCarving

      Public
      Implementation of Sorghum 3D reconstruction and skeletonization.
      C++
      •
      GNU General Public License v3.0
      •5•13•0•0•Updated May 26, 2022May 26, 2022

    • ODE_FBA_Photosynthesis2021

      Public
      Scripts supporting the soon-to-be-submitted ODE-FBA photosynthesis work
      Jupyter Notebook
      •1•1•0•0•Updated Nov 16, 2021Nov 16, 2021

    • yggdrasil-feedstock

      Public
      A conda-smithy repository for yggdrasil.
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Sep 17, 2021Sep 17, 2021

    • CiS2021-hackathon

      Public
      Materials for the Hackathon at the 2021 Crops in Silico Symposium & Workshop
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•0•0•Updated Jul 21, 2021Jul 21, 2021

    • deploy-dev

      Public
      Collection of scripts used for deploying WT locally
      Jupyter Notebook
      •
      MIT License
      •6•0•0•0•Updated Feb 24, 2021Feb 24, 2021

    • jupyterlab_cis

      Public
      Crops in Silico JupyterLab extension
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Feb 24, 2021Feb 24, 2021

    • GRN_Model

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated May 13, 2020May 13, 2020

    • model_integrations

      Public
      A central location to store materials for model integrations that are publicly available.
      1•0•0•0•Updated May 8, 2020May 8, 2020
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