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@danforthcenter Donald Danforth Plant Science Center

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    139 repositories

    • plantcv

      Public
      Plant phenotyping with image analysis
      sciencebioinformaticsimage-analysis
      sciencebioinformaticsimage-analysisplant-phenotypingplantcv
      Python
      •
      Mozilla Public License 2.0
      •292•803•94•24•Updated Jul 13, 2026Jul 13, 2026

    • panvaR

      Public
      A flexible tool for fine-mapping GWAS results
      gwasrrstats
      gwasrrstatsr-packagefine-mapping
      R
      •
      GNU General Public License v3.0
      •0•1•13•0•Updated Jul 7, 2026Jul 7, 2026

    • plantcv-tutorial-watershed

      Public
      watershed tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•2•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-vis-nir

      Public
      plantcv-tutorial-vis-nir
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-v4-VIS-single-plant

      Public
      PlantCV Tutorial using release-4.0 for single plant, VIS image (RGB) analysis
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•6•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-v4-multiobject

      Public
      Tutorial for analyzing multiple plants, leaves, or objects using PlantCV v4.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-unsupervised-ml

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-tripsacum-seedhead

      Public
      A tutorial for open source image analysis for phenotyping seedheads of tripsacum dactyloides
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-threshold

      Public
      Tutorial for understanding Thresholding using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-thermal

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-supervised-ml

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-simple-rgb-workflow

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •2•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-setaria-panicle

      Public
      Tutorial for using PlantCV for analysis of setaria panicle images for bristle count, panicle color and size.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-segment-image-series

      Public
      Tutorial for using PlantCV segment image series
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-seeds

      Public
      seed workflow tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•5•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-roi

      Public
      Tutorial for understanding Regions of Interest using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-rice-chalkiness

      Public
      Tutorial for analyzing chalkiness in rice grains.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-photosynthesis-multi

      Public
      Tutorial for using PlantCV for analysis of photosynthesis images that contain multiple objects (such as multiple plants or leaves).
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-photosynthesis

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-machine-learning

      Public
      Tutorial for analyzing image data using machine learning tools from PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-kmeans-clustering

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•1•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-interactive-pollent-count

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-input-output

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-hyperspectral-smf-detection

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-hyperspectral

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-grayscale

      Public
      Tutorial for analyzing grayscale image data using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-edge-detection

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-color-correction

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-camera-calibration

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • plantcv-tutorial-background-subtraction

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026
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