Repositories list

• gff3tools

  Public
  Java

  •

  Apache License 2.0

  •1•1•0•5•Updated Jan 8, 2026Jan 8, 2026

• read_docs

  Public
  Python

  •

  Apache License 2.0

  •26•13•18•10•Updated Jan 8, 2026Jan 8, 2026

• sequencetools

  Public
  Webin sequence validation API.

  Java

  •

  Apache License 2.0

  •3•11•13•9•Updated Dec 12, 2025Dec 12, 2025

• webin-portal

  Public
  Webin Portal interface.

  TypeScript

  •

  Apache License 2.0

  •1•3•6•8•Updated Dec 10, 2025Dec 10, 2025

• webin-cli

  Public
  Webin command line submission program.

  Java

  •

  Apache License 2.0

  •7•38•54•3•Updated Sep 23, 2025Sep 23, 2025

• ena-content-dataflow

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •6•3•0•2•Updated Sep 3, 2025Sep 3, 2025

• webin-cli-validator

  Public
  Webin CLI command line submission program validation interface.

  Java

  •0•1•0•1•Updated Aug 27, 2025Aug 27, 2025

• enaBrowserTools

  Public
  A collection of scripts to assist in the retrieval of data from the ENA Browser

  Python

  •

  Apache License 2.0

  •18•92•14•1•Updated Aug 1, 2025Aug 1, 2025

• data-hubs-docs

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• webin-xml

  Public
  Webin XML and JSON API.

  webin-submission

  Java

  •

  Apache License 2.0

  •10•13•1•2•Updated Jul 8, 2025Jul 8, 2025

• ena-ftp-downloader

  Public
  Java based tools for bulk downloading read/analysis files from ENA via FTP or Aspera.

  Java

  •

  Apache License 2.0

  •7•43•2•0•Updated Jun 13, 2025Jun 13, 2025

• ena-source-annotation-helper

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• ena-browser-documentation

  Public
  Documentation for ENA Browser via ReadTheDocs

  Python

  •4•3•1•2•Updated May 9, 2025May 9, 2025

• readtools

  Public
  Webin reads validation API.

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 10, 2025Apr 10, 2025

• ena-experiment-checklist

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•5•1•0•Updated Feb 10, 2025Feb 10, 2025

• txmbtools

  Public
  Webin taxonomy reference set validation API.

  Java

  •0•1•0•0•Updated Oct 10, 2024Oct 10, 2024

• ena-nextstrain

  Public
  Python

  •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

• mpox-systematic-analysis-workflow

  Public
  Python

  •

  Apache License 2.0

  •1•1•0•0•Updated Sep 16, 2024Sep 16, 2024

• dca-analysis-tools

  Public
  Python

  •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

• ena-covid-systematic-analysis-workflow

  Public
  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Sep 11, 2024Sep 11, 2024

• pipelite

  Public
  Pipeline and schedule workflow supervisor.

  Java

  •0•4•0•0•Updated Sep 3, 2024Sep 3, 2024

• covid-jovian

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated Aug 12, 2024Aug 12, 2024

• ena-drag-drop-submission-tool

  Public
  Python

  •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

• ena-covid19-docs

  Public
  Python

  •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• ena-fire-service

  Public
  Java

  •

  MIT License

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• ena-local-datahub

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• covid-sequence-analysis-workflow

  Public
  Shell

  •

  Apache License 2.0

  •8•6•2•2•Updated Mar 21, 2024Mar 21, 2024

• ena-snapshot-tool

  Public
  Track changes periodically on ENA sequence datasets

  Java

  •0•1•0•0•Updated Feb 7, 2024Feb 7, 2024

• ena-bulk-webincli

  Public
  Validate and submit reads using Webin-CLI in batch.

  Python

  •

  Apache License 2.0

  •10•11•6•2•Updated Aug 3, 2023Aug 3, 2023

• covid-workflow-manager

  Public
  Python

  •

  Apache License 2.0

  •2•5•2•45•Updated Aug 3, 2023Aug 3, 2023