Repositories list

• eeg-classifier

  Public archive
  Classification tool for EEG data

  Python

  •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

• ptd_header_parser

  Public archive
  Parses header information from *.ptd files and saves the outputs as JSON

  Python

  •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

• csv-import

  Public archive
  Parse a CSV and place CSV info into Subject info using the Python SDK

  Python

  •1•0•0•1•Updated Sep 8, 2025Sep 8, 2025

• mri-deface

  Public archive
  This gear uses the mri_deface tool from Free Surfer to deface an MRI image.

  Shell

  •0•3•1•1•Updated Sep 8, 2025Sep 8, 2025

• pydeface-gear

  Public archive
  A flywheel gear to remove facial structure from MRI images.

  Python

  •

  MIT License

  •0•1•0•0•Updated Sep 8, 2025Sep 8, 2025

• DICOM-to-MIPS

  Public archive
  Generates MIP png images, given a DICOM archive

  Shell

  •0•1•0•0•Updated Sep 8, 2025Sep 8, 2025

• fsl-fslhd

  Public archive
  Python

  •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

• Ants_RegistrationSynQuick

  Public archive
  Python

  •1•0•0•1•Updated Sep 8, 2025Sep 8, 2025

• Gear-Building-Tutorial

  Public archive
  repositories for the gear building tutorial

  Python

  •2•1•1•0•Updated Sep 8, 2025Sep 8, 2025

• redcap

  Public archive
  Python

  •1•0•0•0•Updated Sep 8, 2025Sep 8, 2025

• hcp-func

  Public archive
  Python

  •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

• hcp-icafix

  Public archive
  HCP ICAFIX pipeline

  Shell

  •2•1•2•1•Updated Sep 8, 2025Sep 8, 2025

• hcp-struct

  Public archive
  Python

  •0•0•1•0•Updated Sep 8, 2025Sep 8, 2025

• freesurfer-recon-all

  Public archive
  Gear that runs FreeSurfer v7.2.0 Release (July 19, 2021)

  freesurferrecon-all

  Shell

  •

  MIT License

  •3•3•0•2•Updated Sep 8, 2025Sep 8, 2025

• extract-cmrr-physio

  Public archive
  Extract physiological log files from encoded "_PHYSIO" DICOM file generated by CMRR MB sequences (>=R015, >=VD13A)

  Python

  •0•0•2•0•Updated Sep 8, 2025Sep 8, 2025

• dicom-mr-classifier

  Public archive
  Python

  •4•0•0•1•Updated Sep 8, 2025Sep 8, 2025

• deid_fork

  Public archive
  best effort anonymization for medical images using python

  Python

  •

  MIT License

  •55•0•0•0•Updated May 29, 2025May 29, 2025

• mriqc

  Public archive
  No-reference image quality metrics for quality assessment of MRI

  Shell

  •4•1•0•0•Updated Jul 9, 2024Jul 9, 2024

• fsl-feat

  Public
  FEAT is a software tool for high quality model-based FMRI data analysis

  Dockerfile

  •3•0•0•0•Updated May 1, 2024May 1, 2024

• fsl-anat

  Public
  A Flywheel gear for running FSL's Processing Script: fsl_anat

  Python

  •1•0•0•0•Updated Apr 29, 2024Apr 29, 2024

• fsl-base

  Public
  Build contexts for base images containing various FSL versions

  Python

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• fsl-SuperBET2

  Public archive
  Modified Brain Extraction Tool 2 (BET2) from FMRIB Software Library (FSL) v5.0 called SuperBET2 deletes non-brain tissue from an image of the whole head. It can also estimate the inner and outer skull surfaces, and outer scalp surface, if you have good quality T1.

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• matlab-mcr

  Public archive
  Matlab Compiler Runtime

  Dockerfile

  •4•6•0•0•Updated Apr 18, 2024Apr 18, 2024

• bids-fmriprep

  Public archive
  This repository is archived. Please visit the new repository for updated versions of this gear (URL below).

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•2•2•5•Updated Apr 10, 2024Apr 10, 2024

• fsl-siena-sienax

  Public
  Shell

  •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

• nobrainer-gear

  Public
  This gear wraps nobrainer for prediction on 3D imaging

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

• siemens_to_ismrmrd

  Public
  Siemens to ISMRMRD converter

  Shell

  •0•1•0•0•Updated Mar 15, 2024Mar 15, 2024

• philips_to_ismrmrd

  Public
  Philips to ISMRMRD converter

  XSLT

  •0•0•0•0•Updated Mar 15, 2024Mar 15, 2024

• fsl-topup

  Public
  Flywheel Gear to execute TopUp from FSL

  Python

  •3•3•0•1•Updated Mar 15, 2024Mar 15, 2024

• fsl-fslreorient2std

  Public
  Python

  •0•1•0•1•Updated Mar 15, 2024Mar 15, 2024