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@ga4gh Global Alliance for Genomics and Health

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    174 repositories

    • gkm-core

      Public
      Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)
      Python
      •
      Apache License 2.0
      •0•3•9•1•Updated Oct 12, 2026Oct 12, 2026

    • vrs

      Public
      Extensible specification for representing and uniquely identifying biological sequence variation
      bioinformaticsgenomicsvariation
      bioinformaticsgenomicsvariation
      Jupyter Notebook
      •
      Apache License 2.0
      •43•100•35•1•Updated Oct 12, 2026Oct 12, 2026

    • va-spec

      Public
      An information model for representing variant annotations.
      Jupyter Notebook
      •
      Apache License 2.0
      •7•28•119•0•Updated Oct 12, 2026Oct 12, 2026

    • GA4GH-RegBot

      Public
      Python
      •
      MIT License
      •10•8•0•13•Updated Oct 9, 2026Oct 9, 2026

    • passport-playground-broker

      Public
      Passport Broker for GA4GH Passport Playground
      authenticationauthorizationinteroperability
      authenticationauthorizationinteroperabilitypassportaai
      0•0•0•1•Updated Oct 9, 2026Oct 9, 2026

    • TASC

      Public
      TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.
      interoperabilityharmonisationtechnical-alignment
      interoperabilityharmonisationtechnical-alignment
      Python
      •8•12•29•6•Updated Oct 8, 2026Oct 8, 2026

    • refcloud-api

      Public
      Open, extensible server implementation of the GA4GH Data Repository Service (DRS) specification
      Java
      •
      Apache License 2.0
      •9•0•0•0•Updated Oct 8, 2026Oct 8, 2026

    • 2025-catvar-call-to-action

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•1•1•Updated Oct 8, 2026Oct 8, 2026

    • cat-vrs

      Public
      A terminology and data model for describing categorical variation concepts.
      Makefile
      •
      Apache License 2.0
      •7•9•34•1•Updated Oct 7, 2026Oct 7, 2026

    • refcloud-ui

      Public
      TypeScript
      •0•0•0•12•Updated Oct 7, 2026Oct 7, 2026

    • gif-project-ai-agents

      Public
      Researcher Agents Demonstration Using GA4GH APIs
      Apache License 2.0
      •0•0•10•3•Updated Oct 7, 2026Oct 7, 2026

    • gkm-starter-kit

      Public
      A single community-facing entry point that helps someone understand and adopt GKS in practice.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•2•1•1•Updated Oct 7, 2026Oct 7, 2026

    • GA4GH_PLACE_BASED_EXPOSURE_STANDARD

      Public
      xxxx
      0•0•0•0•Updated Oct 6, 2026Oct 6, 2026

    • vrs-python

      Public
      GA4GH Variation Representation Python Implementation
      bioinformaticsgenomicsga4gh
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •44•64•66•11•Updated Oct 6, 2026Oct 6, 2026

    • analytics-dashboard-api

      Public
      Embedded analytics dashboard on GA4GH metrics
      Jupyter Notebook
      •0•4•1•7•Updated Oct 6, 2026Oct 6, 2026

    • cat-vrs-python

      Public
      GA4GH Categorical Variation Representation Python Implementation
      bioinformaticsgenomicsga4gh
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •5•2•3•0•Updated Oct 5, 2026Oct 5, 2026

    • va-spec-python

      Public
      GA4GH Variation Annotation Python Implementation
      bioinformaticsgenomicsga4gh
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •1•2•4•0•Updated Oct 5, 2026Oct 5, 2026

    • aai

      Public
      This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.
      data-securityworkstream
      data-securityworkstream
      Python
      •16•25•4•6•Updated Oct 3, 2026Oct 3, 2026

    • data-security

      Public
      Python
      •0•0•8•0•Updated Oct 2, 2026Oct 2, 2026

    • ga4gh_workflow_clinic_gsoc_2026

      Public
      GA4GH Workflow Clinic
      snakemakenextflowworkflows
      snakemakenextflowworkflows
      Python
      •
      Apache License 2.0
      •1•1•2•2•Updated Oct 2, 2026Oct 2, 2026

    • ga4gh-agentic-harness-mcp

      Public
      Universal MCP server for GA4GH services and the GA4GH Implementation Registry (DRS/TRS/WES + generic service-info), with pluggable auth and dual stdio/HTTP tran…
      Python
      •
      Apache License 2.0
      •1•2•0•1•Updated Oct 2, 2026Oct 2, 2026

    • beacon

      Public
      Beacon standard
      Apache License 2.0
      •0•0•0•0•Updated Oct 2, 2026Oct 2, 2026

    • tool-registry-service-schemas

      Public
      APIs for discovering genomics tools, their metadata and their containers
      apiworkflowtool
      apiworkflowtoolwdlga4ghcwl
      Shell
      •
      Apache License 2.0
      •18•35•27•1•Updated Sep 30, 2026Sep 30, 2026

    • ga4gh-agentic-harness-profile

      Public
      GA4GH Agentic Harness Profile: protocol-neutral operations, schemas, bindings, and conformance materials
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Sep 30, 2026Sep 30, 2026

    • ga4gh-service-info

      Public
      GA4GH service-info specification.
      Apache License 2.0
      •9•9•16•3•Updated Sep 30, 2026Sep 30, 2026

    • schema-registry

      Public
      Specification for schema registry API
      schema-registry
      schema-registry
      Python
      •
      Apache License 2.0
      •0•0•2•0•Updated Sep 29, 2026Sep 29, 2026

    • gif-project-federated-learning

      Public
      A GIF repository to host configs, tutorials, scripts, etc for the GIF Federated Learning project
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 29, 2026Sep 29, 2026

    • ga4gh-agentic-harness-python

      Public
      Python reference implementation of the GA4GH Agentic Harness Profile
      Python
      •1•0•0•0•Updated Sep 27, 2026Sep 27, 2026

    • task-execution-schemas

      Public
      Apache License 2.0
      •32•98•45•7•Updated Sep 24, 2026Sep 24, 2026

    • ga4gh-sdk

      Public
      Generic SDK and CLI for GA4GH API services
      Rust
      •
      Apache License 2.0
      •6•15•33•0•Updated Sep 24, 2026Sep 24, 2026
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