Repositories list

• pycortex

  Public
  Pycortex is a python-based toolkit for surface visualization of fMRI data

  pythonneuroimagingfmri+ 1

  pythonneuroimagingfmrisurface-visualization

  JavaScript

  •

  BSD 2-Clause "Simplified" License

  •154154 forks•662662 stars•9595 issues•2222 pull requests•Updated Aug 21, 2026Aug 21, 2026

• pycortex-roidraw

  Public
  Pycortex WebGL viewer with in-browser ROI drawing + export (modular: core/adapter/ui)

  JavaScript

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 19, 2026Aug 19, 2026

• literature-review-toolkit

  Public
  Topic-agnostic toolkit for driving an LLM agent through a structured academic literature review

  Python

  •

  MIT License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Aug 19, 2026Aug 19, 2026

• himalaya

  Public
  Multiple-target linear models - CPU/GPU

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1919 forks•120120 stars•22 issues•55 pull requests•Updated Aug 17, 2026Aug 17, 2026

• pymoten

  Public
  Motion energy features from video

  computer-visionneurosciencegabor-filters+ 2

  computer-visionneurosciencegabor-filtersvideo-featuresspatiotemporal-energy-model

  Python

  •

  BSD 2-Clause "Simplified" License

  •1313 forks•4444 stars•33 issues•55 pull requests•Updated Aug 17, 2026Aug 17, 2026

• cottoncandy

  Public
  sugar for s3

  pythons3google-drive+ 2

  pythons3google-drivecloud-storagenumpy-arrays

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •1717 forks•3434 stars•1717 issues•33 pull requests•Updated Aug 17, 2026Aug 17, 2026

• shortclips

  Public
  Mirror of GIN shortclips repository at https://gin.g-node.org/gallantlab/shortclips

  Python

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 15, 2026Aug 15, 2026

• gallantlab.github.io

  Public
  Editorial-magazine redesign preview for gallantlab.org (Hugo, draft / backup)

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 28, 2026Jul 28, 2026

• voxelwise_tutorials

  Public
  Voxelwise Encoding Model tutorials from the Gallant lab.

  neuroimagingfmrifmri-data-analysis+ 1

  neuroimagingfmrifmri-data-analysisencoding-models

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1818 forks•101101 stars•11 issue•44 pull requests•Updated Jul 27, 2026Jul 27, 2026

• autoflatten

  Public
  automatically create cortical flatmaps from FreeSurfer surfaces

  visualizationsurface-reconstructionneuroimaging+ 2

  visualizationsurface-reconstructionneuroimaginganatomical-mriflatmap

  Python

  •

  BSD 2-Clause "Simplified" License

  •22 forks•2929 stars•66 issues•55 pull requests•Updated Jul 26, 2026Jul 26, 2026

• viewer-huth-2012

  Public
  Brain viewer for Huth et al., 2012

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 14, 2026Jul 14, 2026

• viewer-chen-2024

  Public
  Brain viewers for Chen et al., 2024 "The Cortical Representation of Language Timescales is Shared between Reading and Listening"

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 14, 2026Jul 14, 2026

• viewer-stories-group-roidraw

  Public
  Public demo: gallantlab group stories viewer + in-browser ROI and sulcus drawing (pycortex-roidraw v0.4.0)

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 9, 2026Jul 9, 2026

• multifocal-noise-retinotopy

  Public
  Multifocal m-sequence retinotopy: bandpass 1/f spatiotemporal noise movie generator with a web UI

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Jul 1, 2026Jul 1, 2026

• SharpEyes

  Public
  Eyetracking, Retinotopic videos, and Motion-Energy features

  C#

  •11 fork•22 stars•1010 issues•00 pull requests•Updated Jun 19, 2026Jun 19, 2026

• viewer-stories-group

  Public
  Pycortex viewer of group-averaged semantic maps

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• viewer-lescroart-2018

  Public
  Brain viewer of Lescroart & Gallant, 2018

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• viewer-huth-2016

  Public
  Repository containing the brain viewer for Huth et al., 2016

  HTML

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• viewer-deniz-2019

  Public
  Repository for the brain viewer for Deniz et al., 2019

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• viewer-cortical-anatomy

  Public
  Brain viewer for cortical anatomy example

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• viewer-shortclips-group

  Public
  Group average viewer for shortclips data

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• viewer-chen-2026

  Public
  Brain viewer for Chen et al., 2026 (PNAS) — Bilingual language processing relies on shared semantic representations

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• viewer-retinotopy-demo

  Public
  Brain viewer with retinotopy demo

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 25, 2026May 25, 2026

• viewer-cukur-2013

  Public
  Brain viewer for Cukur et al., 2013

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 14, 2026May 14, 2026

• Its-Complicated

  Public
  A guide and infrastructure for making complicated fMRI experiments with games

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• vem-review

  Public
  Code for the paper "Encoding models in functional magnetic resonance imaging: the Voxelwise Encoding Model framework"

  neuroimagingfmriencoding-model

  neuroimagingfmriencoding-model

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 29, 2025Sep 29, 2025

• Fast-Pairwise

  Public
  parallel pairwise distances

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 31, 2025Mar 31, 2025

• Eyetracking

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •11 fork•44 stars•11 issue•00 pull requests•Updated Sep 10, 2024Sep 10, 2024

• headcase-pipeline

  Public
  A pipeline to generate subject-specific headcases for fMRI scanning

  fmrineuromaging

  fmrineuromaging

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •33 forks•77 stars•11 issue•00 pull requests•Updated May 16, 2024May 16, 2024

• hce_v4

  Public
  Repository for the Hierarchical Convolutional Energy Model of V4

  Python

  •

  MIT License

  •00 forks•11 star•11 issue•00 pull requests•Updated Mar 12, 2024Mar 12, 2024