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@getwilds Fred Hutch OCDO WILDS

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    32 repositories

    • wilds-docker-library

      Public
      Collection of Docker images for use in WILDS bioinformatics workflows
      containerswilds-docker
      containerswilds-docker
      Dockerfile
      •
      MIT License
      •3•7•4•6•Updated Aug 18, 2026Aug 18, 2026

    • getwilds.github.io

      Public
      WILDS Website
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •0•0•4•0•Updated Aug 17, 2026Aug 17, 2026

    • wilds-wdl-library

      Public
      Collection of bioinformatics-related WDL modules and pipelines
      bioinformaticswdlwilds-wdl
      bioinformaticswdlwilds-wdl
      WDL
      •
      MIT License
      •8•25•22•7•Updated Aug 17, 2026Aug 17, 2026

    • registry

      Public
      WILDS Repo Registry
      Python
      •0•0•1•0•Updated Aug 17, 2026Aug 17, 2026

    • wilds-wdl-writer

      Public
      An LLM-based tool for building custom WDL workflows using validated components from the WILDS WDL Library
      Python
      •
      MIT License
      •0•1•1•0•Updated Aug 11, 2026Aug 11, 2026

    • cbioformatter

      Public
      cBioPortal Study Formatting Python Package
      Python
      •
      MIT License
      •0•0•12•0•Updated Jun 22, 2026Jun 22, 2026

    • sixtyfour

      Public
      🚚 AWS for Data Scientists
      awsraws-billing
      awsraws-billingrstatsr-pkgwilds-r
      R
      •
      Other
      •2•22•31•3•Updated Jun 5, 2026Jun 5, 2026

    • cancerprof

      Public
      API Client for State Cancer Profiles
      wilds-r
      wilds-r
      R
      •
      Other
      •2•2•17•0•Updated May 20, 2026May 20, 2026

    • .github

      Public
      0•0•1•0•Updated Mar 10, 2026Mar 10, 2026

    • ww-vc-trio

      Public archive
      Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them
      wdl-workflow
      wdl-workflow
      WDL
      •
      MIT License
      •2•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • ww-saturation

      Public archive
      Self-contained WDL workflow that performs saturation mutagenesis analysis
      WDL
      •
      MIT License
      •2•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • setup-uv

      Public
      Set up your GitHub Actions workflow with a specific version of https://docs.astral.sh/uv/
      TypeScript
      •
      MIT License
      •107•0•0•0•Updated Nov 21, 2025Nov 21, 2025

    • wdlparse

      Public
      Parse WDLs
      Rust
      •0•0•0•0•Updated Nov 6, 2025Nov 6, 2025

    • proofr

      Public
      Client for the PROOF API
      r-packagewilds-r
      r-packagewilds-r
      R
      •
      Other
      •11•1•1•0•Updated Sep 24, 2025Sep 24, 2025

    • bs-wilds

      Public
      Custom WILDS Bootstrap theme
      HTML
      •
      Other
      •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • sprocket-wdl-tutorial

      Public
      Tutorial WDL's for 2025 OCDO Summer Hybrid Coworking Day
      WDL
      •0•0•0•0•Updated Jul 23, 2025Jul 23, 2025

    • dasl-quarto

      Public
      Quarto template for FHCC DaSL HTML report
      HTML
      •0•0•0•2•Updated Jun 5, 2025Jun 5, 2025

    • rules

      Public
      WILDS Rules
      Python
      •0•0•0•0•Updated Mar 22, 2025Mar 22, 2025

    • guide

      Public
      WILDS Dev Guide
      documentation
      documentation
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •1•3•9•1•Updated Mar 11, 2025Mar 11, 2025

    • rls

      Public
      Row Level Security Functions for PostgreSQL and Redshift
      postgresqlrstatsredshift
      postgresqlrstatsredshiftrow-level-securitywilds-r
      R
      •
      Other
      •0•2•6•2•Updated Feb 4, 2025Feb 4, 2025

    • makefiles

      Public
      Makefile templates for WILDS projects
      utilities
      utilities
      Makefile
      •0•0•1•0•Updated Feb 3, 2025Feb 3, 2025

    • oncarto

      Public
      🗺 A Map Room
      R
      •
      Other
      •0•2•4•0•Updated Jan 17, 2025Jan 17, 2025

    • proof

      Public
      MIT License
      •0•0•25•0•Updated Dec 30, 2024Dec 30, 2024

    • ww-demo-workflows

      Public
      A repo containing workflows written in WDL to test using the Fred Hutch Cromwell configuration.
      wdl-workflowwilds-wdl
      wdl-workflowwilds-wdl
      WDL
      •
      MIT License
      •1•1•0•1•Updated Dec 16, 2024Dec 16, 2024

    • personas

      Public
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Oct 7, 2024Oct 7, 2024

    • badges

      Public
      WILDS Badges
      utilities
      utilities
      HTML
      •0•0•1•0•Updated Sep 25, 2024Sep 25, 2024

    • rcromwell

      Public
      R client for interacting with Cromwell with WDL workflows
      workflowrworkflow-engine
      workflowrworkflow-enginerstatsr-packageworkflow-managementwilds-r
      R
      •
      Other
      •2•4•8•0•Updated Sep 17, 2024Sep 17, 2024

    • wdl-101

      Public
      This is the repository for the WDL and JSON files accompanying the WDL 101 course.
      trainingwdl-workflow
      trainingwdl-workflow
      WDL
      •0•1•0•1•Updated Apr 10, 2024Apr 10, 2024

    • shiny-cromwell

      Public
      Shiny app for interacting with the Fred Hutch instances of Cromwell. Contact Amy Paguirigan
      shiny-appswilds-r
      shiny-appswilds-r
      R
      •
      MIT License
      •3•0•1•0•Updated Mar 27, 2024Mar 27, 2024

    • bs

      Public
      Bootstrap Components for DASL Projects
      utilitieswilds-r
      utilitieswilds-r
      R
      •
      Other
      •0•0•0•0•Updated Feb 8, 2024Feb 8, 2024
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