Repositories list

• pixel-patrol

  Public
  Scientific Dataset Quality Control and Data Exploration Tool

  quality-controlstatisticsvalidation+ 1

  quality-controlstatisticsvalidationimage-analysis

  Jupyter Notebook

  •

  MIT License

  •11 fork•2323 stars•6161 issues•1010 pull requests•Updated Jun 24, 2026Jun 24, 2026

• radiotrav

  Public
  RadioTRAV: Time Resolved Autoradiography Visualization for Nuclear Radiation

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 26, 2026May 26, 2026

• directionality-quantification

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• url-viewer-bdv-bvv

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 18, 2025Dec 18, 2025

• workshop-visualization

  Public
  Jupyter Notebook

  •00 forks•33 stars•00 issues•00 pull requests•Updated Nov 21, 2025Nov 21, 2025

• pixel-patrol-cytodata

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 19, 2025Nov 19, 2025

• registration-workshop

  Public
  Hugo based website with markdown + reveal slides for a workshop

  Jupyter Notebook

  •

  MIT License

  •11 fork•1010 stars•00 issues•00 pull requests•Updated Nov 3, 2025Nov 3, 2025

• GLAM-paper-plots

  Public
  Notebooks generating the plots for the GLAM paper

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 6, 2025Oct 6, 2025

• glampipe

  Public
  Image analysis pipeline for GLAM

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 18, 2025Sep 18, 2025

• benchmark-playground

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 12, 2025Aug 12, 2025

• smart_arkitekt

  Public
  Doing smart microscopy workflows with Arkitekt and openUC2 hardware

  11 fork•11 star•00 issues•00 pull requests•Updated Apr 11, 2025Apr 11, 2025

• neuroglancer

  Public
  WebGL-based viewer for volumetric data

  TypeScript

  •

  Apache License 2.0

  •368368 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2024Nov 17, 2024

• diff3d

  Public
  3D Image Diffusion

  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 29, 2024May 29, 2024

• drawio

  Public
  draw.io is a JavaScript, client-side editor for general diagramming.

  JavaScript

  •

  Apache License 2.0

  •7.3k7.3k forks•00 stars•00 issues•00 pull requests•Updated Apr 19, 2024Apr 19, 2024

• LabelEditor

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Feb 12, 2023Feb 12, 2023

• radialsymmetrylocalization-hips

  Public
  Shell

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 10, 2023Feb 10, 2023

• find-points-3d-from-2d

  Public
  Find 3D coordinates that correspond to 2D point ROIs given a 3D image

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 26, 2021Nov 26, 2021

• sciview-hip-2021

  Public
  Tutorial materials for Sciview at I2K

  Python

  •

  Creative Commons Zero v1.0 Universal

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 28, 2021Sep 28, 2021

• workshops

  Public
  Workshops by the Image Data Analysis group at MDC

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 7, 2021Jun 7, 2021

• sciview-pyground

  Public
  Playground for using sciview from python

  Python

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated May 6, 2021May 6, 2021

• list-of-update-sites

  Public
  The update sites ImageJ knows about automatically

  Python

  •111111 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2021Jan 19, 2021