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    • Scientific Dataset Quality Control and Data Exploration Tool
      Jupyter Notebook
      MIT License
      1236110Updated Jun 24, 2026Jun 24, 2026
    • radiotrav

      Public
      RadioTRAV: Time Resolved Autoradiography Visualization for Nuclear Radiation
      Python
      0000Updated May 26, 2026May 26, 2026
    • Python
      0000Updated Feb 24, 2026Feb 24, 2026
    • Java
      0000Updated Dec 18, 2025Dec 18, 2025
    • Jupyter Notebook
      0300Updated Nov 21, 2025Nov 21, 2025
    • Python
      0000Updated Nov 19, 2025Nov 19, 2025
    • Hugo based website with markdown + reveal slides for a workshop
      Jupyter Notebook
      MIT License
      11000Updated Nov 3, 2025Nov 3, 2025
    • Notebooks generating the plots for the GLAM paper
      Jupyter Notebook
      0000Updated Oct 6, 2025Oct 6, 2025
    • glampipe

      Public
      Image analysis pipeline for GLAM
      Python
      0000Updated Sep 18, 2025Sep 18, 2025
    • 0000Updated Aug 12, 2025Aug 12, 2025
    • Doing smart microscopy workflows with Arkitekt and openUC2 hardware
      1100Updated Apr 11, 2025Apr 11, 2025
    • WebGL-based viewer for volumetric data
      TypeScript
      Apache License 2.0
      368000Updated Nov 17, 2024Nov 17, 2024
    • diff3d

      Public
      3D Image Diffusion
      Python
      MIT License
      0200Updated May 29, 2024May 29, 2024
    • drawio

      Public
      draw.io is a JavaScript, client-side editor for general diagramming.
      JavaScript
      Apache License 2.0
      7.3k000Updated Apr 19, 2024Apr 19, 2024
    • Java
      BSD 2-Clause "Simplified" License
      3000Updated Feb 12, 2023Feb 12, 2023
    • Shell
      Apache License 2.0
      1000Updated Feb 10, 2023Feb 10, 2023
    • Find 3D coordinates that correspond to 2D point ROIs given a 3D image
      Python
      Apache License 2.0
      0000Updated Nov 26, 2021Nov 26, 2021
    • Tutorial materials for Sciview at I2K
      Python
      Creative Commons Zero v1.0 Universal
      1000Updated Sep 28, 2021Sep 28, 2021
    • workshops

      Public
      Workshops by the Image Data Analysis group at MDC
      MIT License
      1000Updated Jun 7, 2021Jun 7, 2021
    • Playground for using sciview from python
      Python
      Apache License 2.0
      0100Updated May 6, 2021May 6, 2021
    • The update sites ImageJ knows about automatically
      Python
      111000Updated Jan 19, 2021Jan 19, 2021
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