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    • R
      0000Updated Sep 20, 2025Sep 20, 2025
    • R
      0000Updated Sep 10, 2025Sep 10, 2025
    • Bioinformatics pipeline for identification and characterization of mutations in Saccharomyces cerevisiae
      Shell
      4000Updated Jun 10, 2025Jun 10, 2025
    • Snakemake workflow for (pre-)processing sci-RNA-seq3 data
      Python
      MIT License
      5000Updated Mar 19, 2024Mar 19, 2024
    • R toolkit for single cell genomics
      R
      Other
      989000Updated Jan 11, 2024Jan 11, 2024
    • Python
      MIT License
      1000Updated Nov 30, 2023Nov 30, 2023
    • Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
      Python
      GNU Lesser General Public License v3.0
      1.8k000Updated May 23, 2023May 23, 2023
    • cli

      Public
      Python framework for command line applications
      Python
      14000Updated Apr 21, 2023Apr 21, 2023
    • seurat

      Public
      R toolkit for single cell genomics
      R
      Other
      989000Updated Dec 9, 2022Dec 9, 2022
    • The Cellenics pipeline project for dependency-managed work processing.
      R
      Other
      4000Updated Dec 8, 2022Dec 8, 2022
    • Powerpoint and resources for Why Use GitHub for Research talk
      HTML
      0200Updated Nov 4, 2022Nov 4, 2022
    • R
      MIT License
      4000Updated Oct 5, 2022Oct 5, 2022
    • :star: Here we present the pipeline used for analyzing the motion of fluorescently-tagged chromosomal loci. This repository provides the materials required to g…
      Jupyter Notebook
      2000Updated Sep 21, 2022Sep 21, 2022
    • Rmd source files for the HarvardX series PH525x
      R
      MIT License
      2k000Updated Jul 10, 2022Jul 10, 2022
    • PeacoQC

      Public
      Peak-based selection of high quality cytometry data
      R
      11000Updated Jun 22, 2022Jun 22, 2022
    • ids2names

      Public
      R
      Other
      0000Updated Jun 17, 2022Jun 17, 2022
    • Powerpoint and Resources for Getting Started with the HPC workshop
      HTML
      0000Updated Jun 15, 2022Jun 15, 2022
    • Given a file containing a list of metabolites return given list with the HMDB IDs
      Shell
      0000Updated May 25, 2022May 25, 2022
    • How to make a repo on GitHub!
      0000Updated May 5, 2022May 5, 2022
    • crazy_R

      Public
      Cool R tricks that you probably shouldn't use unless you have a very good reason and really know what you are doing
      R
      0100Updated Apr 15, 2022Apr 15, 2022
    • parallel bash examples
      Shell
      0000Updated Apr 13, 2022Apr 13, 2022
    • Scripts to pre-process SPLINTR barcoding libraries as performed in Fennell & Vassiliadis et al. Nature 2021
      HTML
      MIT License
      1000Updated Mar 10, 2022Mar 10, 2022
    • vdjtools

      Public
      Post-analysis of immune repertoire sequencing data
      Groovy
      Other
      42000Updated Mar 9, 2022Mar 9, 2022
    • :warning: 2018 :warning: Bioconductor Workshops
      TeX
      53000Updated May 15, 2019May 15, 2019
    • 📟 My personal vim cheatsheet
      197000Updated Sep 5, 2018Sep 5, 2018
    • pycli

      Public
      A Tiny Python CLI Library Based On argparse
      Python
      2000Updated Jul 30, 2018Jul 30, 2018
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