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@lincbrain LINC: Large-scale Imaging of Neural Circuits

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    34 repositories

    • linc-upptime

      Public
      Status for all LINC services
      Markdown
      •
      MIT License
      •1•0•0•0•Updated Jul 26, 2026Jul 26, 2026

    • synthetic-tracer-histology-segmentation

      Public
      Code for the paper "Tractography-Driven Synthetic Data Generation for Fiber Bundle Segmentation in Tracer Histology"
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 24, 2026Jul 24, 2026

    • linc-convert

      Public
      Data conversion scripts for the LINC project
      Python
      •
      Apache License 2.0
      •4•1•21•11•Updated Jul 21, 2026Jul 21, 2026

    • fiber-bundle-segmentation

      Public
      Code for the paper "Fully Automated Segmentation of Fiber Bundles in Anatomic Tracing Data"
      Python
      •
      MIT License
      •2•1•0•0•Updated Jun 23, 2026Jun 23, 2026

    • linc-docs

      Public
      LINC Documentation
      7•1•6•1•Updated Jun 12, 2026Jun 12, 2026

    • linc-dashboard

      Public
      LINC Dashboard
      Python
      •
      Apache License 2.0
      •1•0•3•1•Updated Jun 5, 2026Jun 5, 2026

    • linc-gallery

      Public
      LINC Gallery
      JavaScript
      •2•0•6•0•Updated Jun 3, 2026Jun 3, 2026

    • opticstream

      Public
      Python
      •2•1•0•0•Updated Apr 21, 2026Apr 21, 2026

    • .github

      Public
      1•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • trk_to_annotation

      Public
      python script to convert trk files to precomputed annoation directory
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Feb 26, 2026Feb 26, 2026

    • linc-archive

      Public
      LINC API server and Web app
      Python
      •20•0•10•0•Updated Jul 25, 2025Jul 25, 2025

    • sandbox-dandi-archive

      Public archive
      DANDI API server and Web app
      Python
      •20•0•0•0•Updated Jul 23, 2025Jul 23, 2025

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •375•1•0•8•Updated Jun 3, 2025Jun 3, 2025

    • linc-archive-infrastructure

      Public
      LINC Archive Infrastructure
      HCL
      •
      Apache License 2.0
      •10•0•0•1•Updated May 27, 2025May 27, 2025

    • webknossos

      Public
      Visualize, share and annotate your large 3D images online
      TypeScript
      •
      GNU Affero General Public License v3.0
      •36•0•3•3•Updated May 3, 2025May 3, 2025

    • Fibers.jl

      Public
      Julia package for reconstructing fiber trajectories from multi-scale, multi-modal imaging data
      Julia
      •
      BSD 3-Clause "New" or "Revised" License
      •6•22•4•3•Updated Apr 24, 2025Apr 24, 2025

    • niivue

      Public
      a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •124•0•0•1•Updated Apr 24, 2025Apr 24, 2025

    • irontract-challenge

      Public
      https://irontract.mgh.harvard.edu
      Python
      •3•2•1•0•Updated Apr 2, 2025Apr 2, 2025

    • handbook

      Public archive
      Handbook for interacting with the DANDI archive.
      HTML
      •18•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • linc-cloud

      Public
      Capture issues related to the LINC cloud infrastructure
      1•0•5•0•Updated Feb 6, 2025Feb 6, 2025

    • neuroglancer-temp-fork

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •375•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • linc-zarr-testing

      Public
      MIT License
      •1•0•0•2•Updated Dec 19, 2024Dec 19, 2024

    • linc-cli

      Public archive
      LINC Client to facilitate common operations
      Python
      •
      Apache License 2.0
      •33•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • dandi-cli

      Public archive
      DANDI command line client to facilitate common operations
      Python
      •
      Apache License 2.0
      •33•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • sandbox-dandi-infrastructure

      Public archive
      Sandbox DANDI infrastructure repository
      HCL
      •
      Apache License 2.0
      •10•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • lumin

      Public
      Jupyter Notebook
      •0•0•1•0•Updated Aug 9, 2024Aug 9, 2024

    • linc-interview

      Public
      Coding exercise for LINC interviews
      Python
      •
      MIT License
      •5•0•0•1•Updated Jul 1, 2024Jul 1, 2024

    • linc-hub

      Public archive
      Infrastructure and code for the dandihub
      Jinja
      •
      Other
      •25•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • NeuroTrALE-ui

      Public archive
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •375•1•0•0•Updated May 29, 2024May 29, 2024

    • linc-pipelines

      Public
      Top-level image processing streams for LINC data
      Shell
      •
      Apache License 2.0
      •3•0•3•1•Updated May 8, 2024May 8, 2024
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