Skip to content
Change the repository type filter

All

    Repositories list

    • octopus

      Public
      Bayesian haplotype-based mutation calling
      C++
      MIT License
      373235412Updated Feb 13, 2026Feb 13, 2026
    • toplot

      Public
      Visualize latent variables obtained with latent Dirichlet methods (topic models)
      Python
      MIT License
      0000Updated Dec 10, 2025Dec 10, 2025
    • smcsmc

      Public
      Demographic inference from whole genomes
      C++
      GNU General Public License v3.0
      41321Updated Oct 18, 2022Oct 18, 2022
    • polyploid

      Public
      Benchmarking variant calling in polyploids
      Jupyter Notebook
      MIT License
      21500Updated Nov 26, 2021Nov 26, 2021
    • Benchmarking single-cell DNA variant calling
      Jupyter Notebook
      MIT License
      0200Updated Aug 10, 2021Aug 10, 2021
    • 0000Updated Jun 9, 2021Jun 9, 2021
    • Paper for octopus variant caller
      Jupyter Notebook
      0300Updated May 7, 2020May 7, 2020
    • analysis

      Public
      Analysis of inference methods on standard population models
      Python
      MIT License
      14000Updated Aug 1, 2019Aug 1, 2019
    • stdpopsim

      Public
      A library of standard simulation models for msprime
      Python
      MIT License
      95000Updated Jul 31, 2019Jul 31, 2019
    • Python
      0300Updated Sep 20, 2018Sep 20, 2018
    • scrm jz_stable branch
      C++
      GNU General Public License v3.0
      7000Updated Jun 10, 2018Jun 10, 2018
    • bamsplit

      Public
      Split a BAM file by haplotype support
      Python
      MIT License
      11610Updated Dec 13, 2017Dec 13, 2017
    • utilities

      Public
      Python
      2050Updated Aug 4, 2016Aug 4, 2016
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.