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    26 repositories

    • NWB_Comp

      Public
      Compile electrophysiological experimental runs into a standardized file format containing metadata about the runs.
      0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • gastric

      Public
      analysis of gastric patterns during temperature ramps
      MATLAB
      •0•1•0•0•Updated Sep 9, 2021Sep 9, 2021

    • stg-embedding

      Public
      Embedding spike times from a small neural circuit to map how collective dynamics change under different conditions
      MATLAB
      •2•0•0•0•Updated Jul 11, 2021Jul 11, 2021

    • Powell_Marder_Nusbaum_2020

      Public
      scripts and data used for the Powell, Marder, Nusbaum 2020 CabPK manuscript
      MATLAB
      •1•0•0•0•Updated Jun 29, 2020Jun 29, 2020

    • size-compensation

      Public
      How neurons can compensate for size changes
      MATLAB
      •0•1•0•0•Updated Jun 29, 2020Jun 29, 2020

    • xolotl

      Public
      xolotl: yet another neuron simulator. Fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB)
      C++
      •
      GNU General Public License v3.0
      •8•1•0•0•Updated Mar 30, 2020Mar 30, 2020

    • setup

      Public
      Setup scripts for Linux computers
      Shell
      •1•2•1•0•Updated Sep 6, 2019Sep 6, 2019

    • computers

      Public
      Issue tracker for computers in the marderlab
      0•3•16•0•Updated Aug 7, 2019Aug 7, 2019

    • Spike2_Burst_Analysis

      Public
      MATLAB
      •0•1•0•0•Updated Jul 29, 2019Jul 29, 2019

    • xolotl-paper

      Public
      Paper describing the xolotl neuron and network simulator. Includes Latex source and MATLAB code to reproduce every figure in the paper.
      papercomputational-neurosciencenetwork-simulatorneuron-modelneuron-simulator
      TeX
      •0•4•1•0•Updated Jul 2, 2019Jul 2, 2019

    • Burst-detection-challenge

      Public
      MATLAB
      •0•0•0•0•Updated Jun 25, 2019Jun 25, 2019

    • Otopalik-Pipkin-Marder-2019

      Public
      Code for modeling and analysis in "Neuronal morphologies built for reliable physiology in a rhythmic motor circuit" (2019).
      MATLAB
      •
      MIT License
      •3•0•0•0•Updated Jan 26, 2019Jan 26, 2019

    • haley_hampton_marder_2018

      Public
      Analysis package for the paper Haley, Hampton, and Marder (2018)
      MATLAB
      •3•0•0•0•Updated Sep 24, 2018Sep 24, 2018

    • eag

      Public
      Multi-compartment model of EAG channels in Drosophila presynaptic terminals
      MATLAB
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 20, 2018Feb 20, 2018

    • oleary_marder_2016

      Public
      code for the paper "Temperature-robust neural function from activity-dependent ion channel regulation"
      C++
      •0•0•0•0•Updated Aug 15, 2016Aug 15, 2016

    • Quantifying_Morphology

      Public
      Software for STG neuron morphology (Otopalik, Goeritz, Sutton, et al., 2017)
      Jupyter Notebook
      •5•3•0•0•Updated Jun 15, 2016Jun 15, 2016

    • Statistics

      Public
      Basic statistics package.
      Jupyter Notebook
      •1•0•0•0•Updated May 26, 2016May 26, 2016

    • Drosophila-larvae

      Public
      Code to analyze spiking activity of drosophila larval motoneurons
      Jupyter Notebook
      •1•1•0•0•Updated May 17, 2016May 17, 2016

    • pyramidal_Neurons

      Public
      Python
      •2•0•0•0•Updated May 3, 2016May 3, 2016

    • Gjorgjieva-code

      Public
      Code written by Julijana Gjorgieva
      C
      •0•0•0•0•Updated Apr 29, 2016Apr 29, 2016

    • Differential_equations

      Public
      Differential equations solver, written by Ted Brookings.
      C++
      •0•0•0•0•Updated Mar 7, 2016Mar 7, 2016

    • Neuron_modeling

      Public
      Code for running some NEURON modeling with real geometries. Written by Ted Brookings.
      Python
      •0•0•0•0•Updated Mar 7, 2016Mar 7, 2016

    • Confocal_Stitching

      Public
      Combines multi-tiled confocal scans into single z-slices. Written by Ted Brookings.
      MATLAB
      •2•0•0•0•Updated Mar 7, 2016Mar 7, 2016

    • Spike_analysis

      Public
      Common spike analysis scripts, all in matlab. Written by Ted Brookings.
      MATLAB
      •0•2•0•0•Updated Mar 7, 2016Mar 7, 2016

    • STG-database-project

      Public
      Runs STG database server for data from stomatogastric preparations
      Python
      •1•1•0•0•Updated Dec 22, 2015Dec 22, 2015

    • oleary_et_al_2014

      Public
      example code for "O’Leary, T., Williams, A. H., Franci, A., & Marder, E. (2014). Cell types, network homeostasis, and pathological compensation from a biologically plausible ion channel expression model. Neuron, 82(4), 809-821."
      C++
      •1•2•0•0•Updated Nov 23, 2015Nov 23, 2015