Repositories list

• EndotypY

  Public
  package formulation of endotyping pipeline

  Jupyter Notebook

  •

  MIT License

  •1•0•4•0•Updated Feb 17, 2026Feb 17, 2026

• MSI_hackathon

  Public
  modern version of MSI with python 3.11

  Python

  •

  Other

  •0•0•0•0•Updated Feb 17, 2026Feb 17, 2026

• DataDiVR_WebApp

  Public
  JavaScript

  •

  MIT License

  •4•11•18•1•Updated Feb 6, 2026Feb 6, 2026

• gathering_graphrag

  Public
  Python

  •0•0•0•0•Updated Jan 19, 2026Jan 19, 2026

• sctools

  Public
  Collection of helper functions to make large scale single cell analysis more bearable

  Python

  •

  MIT License

  •1•0•0•1•Updated Jan 16, 2026Jan 16, 2026

• datadivr

  Public
  datadivr toolset

  Python

  •

  MIT License

  •2•0•8•0•Updated Jan 13, 2026Jan 13, 2026

• apobex

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

• gathering_reproducibility

  Public
  A repository for our gathering on reproducibility on the 2nd of December 2025

  Python

  •1•0•0•1•Updated Dec 3, 2025Dec 3, 2025

• Grundtner_et_al_2025

  Public
  All the code used for analysis of vagus nerve data with MEFISTO

  Jupyter Notebook

  •0•0•0•0•Updated Nov 7, 2025Nov 7, 2025

• Englmaier_et_al_2025

  Public
  A repository for code associated with codonbias analyses presented in the manuscript

  Jupyter Notebook

  •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

• Exposome

  Public template
  This repository will contain the analyses for the human exposure network paper

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Sep 24, 2025Sep 24, 2025

• InfoWalkR

  Public
  package implementation of the MultiOme Paper

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Sep 9, 2025Sep 9, 2025

• mefistotools

  Public
  Repository containing little helpers for streamlining analysis of mutliomics data with MEFISTO

  Python

  •

  MIT License

  •0•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• CartoGRAPHs

  Public
  HTML

  •

  MIT License

  •1•24•2•0•Updated May 13, 2025May 13, 2025

• netviz-iactive-

  Public
  PoC & tests for multilayer networks analysis

  Python

  •0•1•2•0•Updated Apr 23, 2025Apr 23, 2025

• Radhouani_2025_scRNAseq

  Public
  scRNA-seq analysis for Radhouani et al, Science Immunology, 2025.

  HTML

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• AutoCore

  Public
  AutoCore code

  Jupyter Notebook

  •0•3•0•0•Updated Jan 31, 2025Jan 31, 2025

• Radhouani_2025_QuantSeq

  Public
  QuantSeq analysis from Radhouani et al., 2025, Science Immunology.

  Jupyter Notebook

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• SA_bone_marrow_scRNAseq

  Public
  scRNA-seq analysis for Radhouani et al, Science Immunology, 2025.

  Jupyter Notebook

  •0•0•0•0•Updated Jan 19, 2025Jan 19, 2025

• SA_bone_marrow_QuantSeq

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 19, 2025Jan 19, 2025

• rgb4k

  Public
  this about color rgb rainbow max experience force lumination

  Python

  •0•0•0•0•Updated Nov 17, 2024Nov 17, 2024

• Neuwirth_Malzl_et_al_2024

  Public
  Code repository for all analyses shown in Neuwirth and Malzl et al. 2024

  Jupyter Notebook

  •

  MIT License

  •0•3•0•0•Updated Nov 5, 2024Nov 5, 2024

• MultiOmeExplorer

  Public
  The shiny app for detailed data exploration complementing Buphamalai et.al.

  R

  •1•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• MultiOme

  Public
  Network-based project to explore gene connectivity through biological scales

  HTML

  •

  MIT License

  •5•23•1•0•Updated Oct 21, 2024Oct 21, 2024

• mutsigintsKit

  Public
  Functions for the mutsigints project.

  R

  •0•0•0•0•Updated Sep 15, 2024Sep 15, 2024

• mutsigints

  Public
  Interactions of mutational signatures and cancer states

  Jupyter Notebook

  •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

• Grundtner_et_al_2024

  Public
  All the code used for data analysis with MEFISTO

  Jupyter Notebook

  •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• catwork

  Public
  Enables participants of an event to scan each others QR codes and creates a social network in real time

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

• CytoDiVR

  Public
  Cytoscape Application to provide feature for the use of the DataDiVR

  Java

  •

  MIT License

  •0•0•0•0•Updated Apr 12, 2024Apr 12, 2024

• ExampleExtension

  Public template
  Example Repository of an VRNetzer backend extension

  HTML

  •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024