natverse

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35 repositories

nat.templatebrains
Public
Support for 3D template brains used as targets for image registration
r image-registration neuroanatomy
r image-registration neuroanatomy neuroanatomy-toolbox bridging-registrations natverse
R
•
GNU General Public License v3.0
•0•3•6•0•Updated Mar 21, 2026Mar 21, 2026
coconat
Public
Core Connectomics Utilities for the Natverse
R
•
GNU General Public License v3.0
•0•1•2•0•Updated Mar 14, 2026Mar 14, 2026
coconatfly
Public
Comparative Connectomics of Public and In Progress Drosophila Datasets
r neuroscience connectomics
r neuroscience connectomics neuroanatomy-toolbox
R
•2•8•8•4•Updated Mar 12, 2026Mar 12, 2026
fafbseg
Public
Support functions for analysis of Drosophila connectomes especially the FAFB-FlyWire whole brain
r neuroscience connectomics
r neuroscience connectomics neuroanatomy-toolbox
R
•
GNU General Public License v3.0
•5•11•17•1•Updated Mar 11, 2026Mar 11, 2026
natverse
Public
Umbrella package to help install/load nat packages
R
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GNU General Public License v3.0
•0•11•5•0•Updated Mar 9, 2026Mar 9, 2026
nat
Public
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
cran r visualisation
cran r visualisation neuroscience image-analysis neuron connectomics 3d neuroanatomy neuroanatomy-toolbox
R
•27•77•48•10•Updated Mar 7, 2026Mar 7, 2026
influencer
Public
An R package for calculating indirect connectivity scores
R
•
GNU General Public License v3.0
•0•1•0•0•Updated Mar 4, 2026Mar 4, 2026
natverse.github.io
Public
Static repo for github pages
HTML
•0•0•0•0•Updated Mar 3, 2026Mar 3, 2026
natverse_hugo
Public
TeX
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Creative Commons Attribution Share Alike 4.0 International
•2•0•4•0•Updated Mar 3, 2026Mar 3, 2026
nat.ggplot
Public
Helper package for publication-quality 2D neuroanatomy renderings using ggplot2
R
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Other
•0•3•0•0•Updated Feb 16, 2026Feb 16, 2026
malecns
Public
Access to the latest 'Janelia FlyEM' datasets
R
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GNU General Public License v3.0
•0•2•3•0•Updated Feb 13, 2026Feb 13, 2026
nat.jrcbrains
Public
Janelia Research Campus Bridging Registrations for Drosophila Brains
registration neuroanatomy-toolbox janelia
registration neuroanatomy-toolbox janelia bridging-registrations drosophila-brains
R
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Other
•0•0•3•0•Updated Feb 11, 2026Feb 11, 2026
nat.nblast
Public
R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.
neurons morphological-analysis neuroanatomy
neurons morphological-analysis neuroanatomy neuroanatomy-toolbox nblast
R
•6•17•14•4•Updated Feb 3, 2026Feb 3, 2026
malevnc
Public
Support for working with Janelia FlyEM Male VNC dataset
R
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GNU General Public License v3.0
•1•1•5•2•Updated Jan 26, 2026Jan 26, 2026
natcpp
Public
Fast C++ functions for computational neuroanatomy
r computational-neuroscience neuroanatomy-toolbox
r computational-neuroscience neuroanatomy-toolbox
C++
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GNU General Public License v3.0
•1•0•0•0•Updated Oct 14, 2025Oct 14, 2025
neuprintr
Public
R client utilities for interacting with the neuPrint connectome analysis service
r neuroscience connectomics
r neuroscience connectomics neuroanatomy-toolbox
R
•3•5•13•2•Updated Oct 10, 2025Oct 10, 2025
natmanager
Public
Streamlined installation of natverse packages
R
•0•4•0•0•Updated Aug 18, 2025Aug 18, 2025
hemibrainr
Public
Code for working with data from Janelia FlyEM's hemibrain project
R
•4•8•17•1•Updated Apr 8, 2025Apr 8, 2025
vfbconnectr
Public
An R Interface to vfb-connect to query virtualflybrain.org
r neuroscience drosophila
r neuroscience drosophila natverse
R
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GNU General Public License v3.0
•1•0•1•0•Updated Aug 31, 2024Aug 31, 2024
nat.utils
Public
R package providing utility functions in support of NeuroAnatomy Toolbox (nat)
cran nat neuroanatomy-toolbox
cran nat neuroanatomy-toolbox
R
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GNU General Public License v3.0
•1•0•0•0•Updated Aug 27, 2024Aug 27, 2024
neuronbridger
Public
R client utilities for interacting with the neuronbridge matching service
ImageJ Macro
•3•1•1•1•Updated Jun 6, 2024Jun 6, 2024
colorRamps
Public
R
•0•0•0•0•Updated Mar 6, 2024Mar 6, 2024
nat.h5reg
Public
Neuroanatomy Toolbox Support for Saalfeld/Bogovic HDF5 Registration Format
r neuroscience neuroanatomy-toolbox
r neuroscience neuroanatomy-toolbox
R
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Other
•0•1•1•0•Updated Nov 18, 2023Nov 18, 2023
elmr
Public
Support for working with light and electron microscopy fly brain data
r neuroanatomy neuroanatomy-toolbox
r neuroanatomy neuroanatomy-toolbox
R
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GNU General Public License v3.0
•3•8•4•0•Updated Aug 31, 2023Aug 31, 2023
neuromorphr
Public
R client utilities for interacting with the neuromorpho.org repository
R
•1•1•1•0•Updated Apr 19, 2023Apr 19, 2023
insectbrainr
Public
R client utilities for interacting with the InsectBrainDB.org
R
•0•0•0•0•Updated Apr 17, 2023Apr 17, 2023
dracor
Public
Decode Draco Format 3D Mesh data
r r-package 3d-mesh
r r-package 3d-mesh natverse
C++
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Other
•1•0•0•0•Updated Feb 1, 2023Feb 1, 2023
flycircuit
Public
R package flycircuit
r drosophila neuroanatomy
r drosophila neuroanatomy neuroanatomy-toolbox natverse
R
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GNU General Public License v3.0
•2•5•3•0•Updated Jan 18, 2023Jan 18, 2023
nat.flybrains
Public
Support for Drosophila bridging/mirroring registrations in R
r drosophila neuroanatomy
r drosophila neuroanatomy neuroanatomy-toolbox template-brains bridging-registrations natverse
Haxe
•
GNU General Public License v3.0
•3•2•9•0•Updated Aug 16, 2022Aug 16, 2022
rcatmaid
Public
R package providing API access to the CATMAID web image annotation tool
r connectomics neuroanatomy
r connectomics neuroanatomy catmaid neuroanatomy-toolbox
R
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GNU General Public License v3.0
•6•9•22•5•Updated Aug 14, 2022Aug 14, 2022