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17 repositories

navis
Public
Python library for analysis of neuroanatomical data.
visualization python blender
visualization python blender neuroscience transform segmentation neurons swc volumes skeletons
Python
•
GNU General Public License v3.0
•36•113•33•14•Updated Mar 21, 2026Mar 21, 2026
octarine-navis-plugin
Public
Octarine plugin to visualize navis objects
Python
•
GNU General Public License v3.0
•0•1•0•0•Updated Feb 26, 2026Feb 26, 2026
skeletor
Public
Extraction of 3D skeletons from meshes.
python skeleton mesh
python skeleton mesh neurons volumes connectomics meshes 3d skeletonization teasar
Python
•
GNU General Public License v3.0
•29•253•30•0•Updated Feb 25, 2026Feb 25, 2026
fafbseg-py
Public
Tools to work with the FlyWire connectome. Fully interoperable with navis.
google annotation cave
google annotation cave segmentation brain fly connectome navis synapses flywire
Python
•
GNU General Public License v3.0
•9•21•6•2•Updated Feb 20, 2026Feb 20, 2026
navis-flybrains
Public
Transforms for navis that enable mapping between different Drosophila template brains.
templates drosophila vnc
templates drosophila vnc mirroring brain registrations navis transforms bridging
Jupyter Notebook
•
GNU General Public License v3.0
•3•17•5•2•Updated Jan 28, 2026Jan 28, 2026
navis-mousebrains
Public
Template brains and transforms for mouse brains
Python
•
GNU General Public License v3.0
•0•3•0•0•Updated Jan 4, 2026Jan 4, 2026
sparse-cubes
Public
Mesh generation from sparse matrices
voxel cubes mesh
voxel cubes mesh sparse dual meshing neurons marching contouring
Python
•
GNU General Public License v3.0
•1•23•1•0•Updated Nov 5, 2025Nov 5, 2025
pymaid
Public
Python library to interface with CATMAID servers. Fully interoperable with navis.
python blender3d neuron
python blender3d neuron anatomy catmaid nblast
Python
•
GNU General Public License v3.0
•11•24•36•3•Updated Mar 19, 2025Mar 19, 2025
neuropython2024
Public
Documentation and Material for the 2024 NeuroPython Workshop
Jupyter Notebook
•1•1•0•0•Updated Sep 24, 2024Sep 24, 2024
fastcore
Public
[WIP] Fast core functions for navis re-implemented in Cython.
similarity connectivity vertex
similarity connectivity vertex connectome
Jupyter Notebook
•
GNU General Public License v3.0
•2•1•3•1•Updated Sep 16, 2024Sep 16, 2024
.github
Public
0•1•0•0•Updated Apr 6, 2023Apr 6, 2023
connectomes
Public
[WIP] Unified interface to various backends used for hosting connectomes in the cloud.
Python
•
GNU General Public License v3.0
•1•6•3•3•Updated Oct 7, 2022Oct 7, 2022
navis-pipelines
Public
Run navis pipelines described by YAML files.
GNU General Public License v3.0
•0•1•0•0•Updated Sep 2, 2022Sep 2, 2022
navis-nblast-gpu
Public
NBLAST running on the GPU using PyTorch [WIP]
Python
•
GNU General Public License v3.0
•0•3•0•0•Updated Jul 31, 2022Jul 31, 2022
navis-nblast-large
Public
Implementation of NBLAST for large datasets
neurons large-scale nblast
neurons large-scale nblast
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated May 23, 2022May 23, 2022
pymaid_template
Public
A starter kit for people using python-catmaid for neuronal analysis
Python
•
The Unlicense
•0•0•0•0•Updated Feb 21, 2022Feb 21, 2022
navis-nsim
Public
Interface between navis and the NEURON simulator
GNU General Public License v3.0
•0•0•0•0•Updated Sep 20, 2021Sep 20, 2021

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NAVis

All

All

17 repositories

navis

octarine-navis-plugin

skeletor

fafbseg-py

navis-flybrains

navis-mousebrains

sparse-cubes

pymaid

neuropython2024

fastcore

.github

connectomes

navis-pipelines

navis-nblast-gpu

navis-nblast-large

pymaid_template

navis-nsim

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Repositories list

17 repositories